miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6400 5' -52.2 NC_001847.1 + 132554 0.66 0.981536
Target:  5'- gGGcUCG-CGUGCg---GcCGCGGCGGCc -3'
miRNA:   3'- aCC-AGCuGCACGaauaC-GUGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 37433 0.66 0.981536
Target:  5'- cGGgCGACuUGCUggcgGCGCuGugGACg -3'
miRNA:   3'- aCCaGCUGcACGAaua-CGUG-CugCUG- -5'
6400 5' -52.2 NC_001847.1 + 103271 0.66 0.981536
Target:  5'- cGG-CGGCGgcgGCg---GCGgCGGCGGCa -3'
miRNA:   3'- aCCaGCUGCa--CGaauaCGU-GCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 458 0.66 0.981536
Target:  5'- cGG-CGGCGgcgGCg---GCGgCGGCGGCa -3'
miRNA:   3'- aCCaGCUGCa--CGaauaCGU-GCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 67646 0.66 0.981536
Target:  5'- cGG-CGGCG-GCUacgauuacgacUGUGacuGCGACGACg -3'
miRNA:   3'- aCCaGCUGCaCGA-----------AUACg--UGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 35934 0.66 0.981536
Target:  5'- cGGUCGcGCGcGCUUGcgccugggcgcUGCugG-CGGCg -3'
miRNA:   3'- aCCAGC-UGCaCGAAU-----------ACGugCuGCUG- -5'
6400 5' -52.2 NC_001847.1 + 99193 0.66 0.981536
Target:  5'- gUGGUCcucGCGcgagGCggccGCGCGGCGGCg -3'
miRNA:   3'- -ACCAGc--UGCa---CGaauaCGUGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 86785 0.66 0.981324
Target:  5'- cGGUCguGACGcUGCUgg-GCAUgucggagGACGGCa -3'
miRNA:   3'- aCCAG--CUGC-ACGAauaCGUG-------CUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 50223 0.66 0.979326
Target:  5'- cUGGcCGAUGcUGCagg-GCGCGGCaGACg -3'
miRNA:   3'- -ACCaGCUGC-ACGaauaCGUGCUG-CUG- -5'
6400 5' -52.2 NC_001847.1 + 36083 0.66 0.979326
Target:  5'- cUGGaCGcGCG-GCUggcggaGCGCGGCGACg -3'
miRNA:   3'- -ACCaGC-UGCaCGAaua---CGUGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 59906 0.66 0.979326
Target:  5'- aGGgCGGCGcGCgc--GCGCGGCGAg -3'
miRNA:   3'- aCCaGCUGCaCGaauaCGUGCUGCUg -5'
6400 5' -52.2 NC_001847.1 + 53718 0.66 0.979326
Target:  5'- gGGcCGGCG-GCUggcgcUGUGCGCcuGCGACc -3'
miRNA:   3'- aCCaGCUGCaCGA-----AUACGUGc-UGCUG- -5'
6400 5' -52.2 NC_001847.1 + 68729 0.66 0.979095
Target:  5'- cGGccgaGACGUagaaggaaaccccGU-UGUGCGCGACGACg -3'
miRNA:   3'- aCCag--CUGCA-------------CGaAUACGUGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 15520 0.66 0.976925
Target:  5'- cGGcUCGGCGggagccgcgggcUGCUggcgccgGUGCGCGcGCGGCc -3'
miRNA:   3'- aCC-AGCUGC------------ACGAa------UACGUGC-UGCUG- -5'
6400 5' -52.2 NC_001847.1 + 107557 0.66 0.976925
Target:  5'- aGGUCGAgCGUggccaGCUcgagccUGCcggGCGACGACa -3'
miRNA:   3'- aCCAGCU-GCA-----CGAau----ACG---UGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 4744 0.66 0.976925
Target:  5'- aGGUCGAgCGUggccaGCUcgagccUGCcggGCGACGACa -3'
miRNA:   3'- aCCAGCU-GCA-----CGAau----ACG---UGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 54743 0.66 0.976925
Target:  5'- cGGg-GACGUGCUgcucaacGUGUACGugG-Cg -3'
miRNA:   3'- aCCagCUGCACGAa------UACGUGCugCuG- -5'
6400 5' -52.2 NC_001847.1 + 51930 0.66 0.976925
Target:  5'- cGG-CGAuCGUgGCcgggGCGCGACGGCc -3'
miRNA:   3'- aCCaGCU-GCA-CGaauaCGUGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 81581 0.66 0.976674
Target:  5'- gGGcCGGCG-GCUacgggagcgucguUGUGCACGAggccgcCGGCg -3'
miRNA:   3'- aCCaGCUGCaCGA-------------AUACGUGCU------GCUG- -5'
6400 5' -52.2 NC_001847.1 + 72007 0.66 0.976421
Target:  5'- cGGgccCGACcugGUGCacaaccgacccGUGCGCGGCGGCg -3'
miRNA:   3'- aCCa--GCUG---CACGaa---------UACGUGCUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.