miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6400 5' -52.2 NC_001847.1 + 77699 0.66 0.975909
Target:  5'- aGG-CGGCGUGCgcgcgcgcgcugGUGCGCGcuUGGCg -3'
miRNA:   3'- aCCaGCUGCACGaa----------UACGUGCu-GCUG- -5'
6400 5' -52.2 NC_001847.1 + 94356 0.66 0.974325
Target:  5'- aGGagGAC--GCUg--GCGCGGCGGCg -3'
miRNA:   3'- aCCagCUGcaCGAauaCGUGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 131935 0.66 0.974325
Target:  5'- cGGagGcACGUGCgccgGCgaugGCGGCGACg -3'
miRNA:   3'- aCCagC-UGCACGaauaCG----UGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 116364 0.66 0.974325
Target:  5'- cUGGUgugCGugGUGCUg--GCGCGcuaccGCGAg -3'
miRNA:   3'- -ACCA---GCugCACGAauaCGUGC-----UGCUg -5'
6400 5' -52.2 NC_001847.1 + 44291 0.66 0.974325
Target:  5'- cGG-CGGCGcgGCgcg-GCGCGGCGGg -3'
miRNA:   3'- aCCaGCUGCa-CGaauaCGUGCUGCUg -5'
6400 5' -52.2 NC_001847.1 + 70630 0.66 0.974325
Target:  5'- aUGGgcaaGGCGcUGCgcggGCugGAUGACg -3'
miRNA:   3'- -ACCag--CUGC-ACGaauaCGugCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 76033 0.66 0.971518
Target:  5'- cGGagCGGCG-GCg---GCgACGACGACg -3'
miRNA:   3'- aCCa-GCUGCaCGaauaCG-UGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 116552 0.66 0.971518
Target:  5'- aGG-CGACGUGUgc---CugGGCGACu -3'
miRNA:   3'- aCCaGCUGCACGaauacGugCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 54571 0.67 0.968498
Target:  5'- aGGaCGACGgccccGCgg--GCugGGCGGCg -3'
miRNA:   3'- aCCaGCUGCa----CGaauaCGugCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 1923 0.67 0.968498
Target:  5'- aGGU-GGCGagGCUUAgccgGCGCG-CGGCg -3'
miRNA:   3'- aCCAgCUGCa-CGAAUa---CGUGCuGCUG- -5'
6400 5' -52.2 NC_001847.1 + 56110 0.67 0.968498
Target:  5'- cGcGUCGAUGUGCcauuuggcgGUGCACGcCGcGCa -3'
miRNA:   3'- aC-CAGCUGCACGaa-------UACGUGCuGC-UG- -5'
6400 5' -52.2 NC_001847.1 + 35491 0.67 0.968498
Target:  5'- gGGUcCGGCGcGCgUUAUGCuCGGCGuGCg -3'
miRNA:   3'- aCCA-GCUGCaCG-AAUACGuGCUGC-UG- -5'
6400 5' -52.2 NC_001847.1 + 69347 0.67 0.965256
Target:  5'- cUGG-CGGCGcuggUGCUg--GCGCGcGCGGCg -3'
miRNA:   3'- -ACCaGCUGC----ACGAauaCGUGC-UGCUG- -5'
6400 5' -52.2 NC_001847.1 + 74462 0.67 0.965256
Target:  5'- aGGUgacgccgGACGUGC-UGUGCcGCGAgGGCg -3'
miRNA:   3'- aCCAg------CUGCACGaAUACG-UGCUgCUG- -5'
6400 5' -52.2 NC_001847.1 + 74436 0.67 0.965256
Target:  5'- aGGUCGugGcgGC----GCACGACGcCg -3'
miRNA:   3'- aCCAGCugCa-CGaauaCGUGCUGCuG- -5'
6400 5' -52.2 NC_001847.1 + 36015 0.67 0.961787
Target:  5'- cGGgCGugGUGCUggggcUGCGCgcgGACGAg -3'
miRNA:   3'- aCCaGCugCACGAau---ACGUG---CUGCUg -5'
6400 5' -52.2 NC_001847.1 + 103868 0.67 0.961787
Target:  5'- cUGGUCGgugauGCGguuugGCagGUGCACGAuCGAg -3'
miRNA:   3'- -ACCAGC-----UGCa----CGaaUACGUGCU-GCUg -5'
6400 5' -52.2 NC_001847.1 + 42339 0.67 0.961787
Target:  5'- gUGGgCGccCGUGUg---GCGCGGCGGCg -3'
miRNA:   3'- -ACCaGCu-GCACGaauaCGUGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 34094 0.67 0.958084
Target:  5'- cGGcCGcCGUgGCUc--GCGCGGCGGCg -3'
miRNA:   3'- aCCaGCuGCA-CGAauaCGUGCUGCUG- -5'
6400 5' -52.2 NC_001847.1 + 33667 0.67 0.958084
Target:  5'- cGGUCGcuaGCGcgccgcccuUGCggccGCGCGGCGGCa -3'
miRNA:   3'- aCCAGC---UGC---------ACGaauaCGUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.