miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6401 3' -56.7 NC_001847.1 + 18332 0.66 0.852995
Target:  5'- cGGAgCaGCUGCCggGCgCagucGCGGUCGCc -3'
miRNA:   3'- -CCU-GaUGACGGaaCG-Gac--CGCCAGCG- -5'
6401 3' -56.7 NC_001847.1 + 8460 0.66 0.852995
Target:  5'- cGGAg-GCggcGCCggGCCgggGGCGG-CGCu -3'
miRNA:   3'- -CCUgaUGa--CGGaaCGGa--CCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 13129 0.66 0.84825
Target:  5'- cGGGCggcgccgcgccgcCUGCCgcgGCC-GGCGGUUGg -3'
miRNA:   3'- -CCUGau-----------GACGGaa-CGGaCCGCCAGCg -5'
6401 3' -56.7 NC_001847.1 + 130792 0.66 0.845047
Target:  5'- uGGAg-GCgGCCgcgGCCggGGCGGagGCg -3'
miRNA:   3'- -CCUgaUGaCGGaa-CGGa-CCGCCagCG- -5'
6401 3' -56.7 NC_001847.1 + 54586 0.66 0.845047
Target:  5'- cGGGCUGg-GCg--GCgCUGGCGG-CGCg -3'
miRNA:   3'- -CCUGAUgaCGgaaCG-GACCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 69066 0.66 0.845047
Target:  5'- uGGACUuucuaacgcGCUcGCCgcGUCUGGCGccgCGCg -3'
miRNA:   3'- -CCUGA---------UGA-CGGaaCGGACCGCca-GCG- -5'
6401 3' -56.7 NC_001847.1 + 27979 0.66 0.845047
Target:  5'- uGGAg-GCgGCCgcgGCCggGGCGGagGCg -3'
miRNA:   3'- -CCUgaUGaCGGaa-CGGa-CCGCCagCG- -5'
6401 3' -56.7 NC_001847.1 + 32599 0.66 0.845047
Target:  5'- gGGAUcgUGCUGCaucUGCCUGGacgcgaucacCGG-CGCg -3'
miRNA:   3'- -CCUG--AUGACGga-ACGGACC----------GCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 18194 0.67 0.836906
Target:  5'- cGGACgcgcgGCgagGUCUcgGgCUGGCGGUCu- -3'
miRNA:   3'- -CCUGa----UGa--CGGAa-CgGACCGCCAGcg -5'
6401 3' -56.7 NC_001847.1 + 114738 0.67 0.836906
Target:  5'- gGGACcGgUGCCggcgGUC--GCGGUCGCg -3'
miRNA:   3'- -CCUGaUgACGGaa--CGGacCGCCAGCG- -5'
6401 3' -56.7 NC_001847.1 + 72300 0.67 0.836906
Target:  5'- -uGCUGCUGCacaacgcgcGCgUGGCGGUggaCGCg -3'
miRNA:   3'- ccUGAUGACGgaa------CGgACCGCCA---GCG- -5'
6401 3' -56.7 NC_001847.1 + 67838 0.67 0.836906
Target:  5'- cGGCgggGCUGCCg-GCgCUGGCGcGcggcUCGCg -3'
miRNA:   3'- cCUGa--UGACGGaaCG-GACCGC-C----AGCG- -5'
6401 3' -56.7 NC_001847.1 + 48917 0.67 0.836906
Target:  5'- aGuCU-CUGUCcauaGCCUGGCGGgCGCa -3'
miRNA:   3'- cCuGAuGACGGaa--CGGACCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 54745 0.67 0.836906
Target:  5'- gGGACgUGCUGCUcaacgUGUacgUGGCGGU-GCa -3'
miRNA:   3'- -CCUG-AUGACGGa----ACGg--ACCGCCAgCG- -5'
6401 3' -56.7 NC_001847.1 + 72894 0.67 0.828579
Target:  5'- cGGGCaGCUGCagguggcgcGCCacgaGGCGGUCGg -3'
miRNA:   3'- -CCUGaUGACGgaa------CGGa---CCGCCAGCg -5'
6401 3' -56.7 NC_001847.1 + 15449 0.67 0.828579
Target:  5'- uGGcGCUGCUGaaaaGCgUGGCGG-CGCa -3'
miRNA:   3'- -CC-UGAUGACggaaCGgACCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 17908 0.67 0.828579
Target:  5'- aGGGCgacgGCgGCCaaggUGCCgguccgGGCGGcaggcaugaUCGCa -3'
miRNA:   3'- -CCUGa---UGaCGGa---ACGGa-----CCGCC---------AGCG- -5'
6401 3' -56.7 NC_001847.1 + 14150 0.67 0.828579
Target:  5'- cGGCUGCgcaGCggcgGCCggGGCGGcCGCg -3'
miRNA:   3'- cCUGAUGa--CGgaa-CGGa-CCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 134116 0.67 0.827736
Target:  5'- -uGCUGCUGCggcgcgccgcgggCggcgGCCUGGUGGagCGCg -3'
miRNA:   3'- ccUGAUGACG-------------Gaa--CGGACCGCCa-GCG- -5'
6401 3' -56.7 NC_001847.1 + 31303 0.67 0.827736
Target:  5'- -uGCUGCUGCggcgcgccgcgggCggcgGCCUGGUGGagCGCg -3'
miRNA:   3'- ccUGAUGACG-------------Gaa--CGGACCGCCa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.