miRNA display CGI


Results 1 - 20 of 423 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6402 3' -52.8 NC_001847.1 + 78250 0.66 0.974527
Target:  5'- cCCgCCGGCGUCGccgUCGccGGCGgGCccguuGGCCg -3'
miRNA:   3'- -GG-GGUCGUAGUa--AGU--CCGCgUG-----UUGG- -5'
6402 3' -52.8 NC_001847.1 + 113403 0.66 0.974527
Target:  5'- cCCCCGcGCGcgCGggCcGGCGC-CGGCCc -3'
miRNA:   3'- -GGGGU-CGUa-GUaaGuCCGCGuGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 33620 0.66 0.974527
Target:  5'- gCCCUGGCGa----CGGGCGCgGCGGCUg -3'
miRNA:   3'- -GGGGUCGUaguaaGUCCGCG-UGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 4792 0.66 0.974527
Target:  5'- uUCCAGCAUgacggCAUgcuggacgAGGCGCGCGauGCCc -3'
miRNA:   3'- gGGGUCGUA-----GUAag------UCCGCGUGU--UGG- -5'
6402 3' -52.8 NC_001847.1 + 71597 0.66 0.974527
Target:  5'- gCCCGGCGcCGgccCAGGCgGCGcCAGCa -3'
miRNA:   3'- gGGGUCGUaGUaa-GUCCG-CGU-GUUGg -5'
6402 3' -52.8 NC_001847.1 + 10590 0.66 0.974527
Target:  5'- cCCCCGcGCGcgCGggCcGGCGC-CGGCCc -3'
miRNA:   3'- -GGGGU-CGUa-GUaaGuCCGCGuGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 101476 0.66 0.974527
Target:  5'- cCUCUAGCccCGcgCGGGC-CGCGGCCa -3'
miRNA:   3'- -GGGGUCGuaGUaaGUCCGcGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 19090 0.66 0.974258
Target:  5'- gCCCCGGUgcccgaggcugccGUCAcaaAGuGCGCGCAgugcACCg -3'
miRNA:   3'- -GGGGUCG-------------UAGUaagUC-CGCGUGU----UGG- -5'
6402 3' -52.8 NC_001847.1 + 34089 0.66 0.974258
Target:  5'- gCCCCGGgGcCGgccucggCGGGUGCGCAaauugggaccccgGCCg -3'
miRNA:   3'- -GGGGUCgUaGUaa-----GUCCGCGUGU-------------UGG- -5'
6402 3' -52.8 NC_001847.1 + 100560 0.66 0.974258
Target:  5'- gCCgCGGCgAUUAUUgccgcCAGGCGCugccgccgcugcaGCGGCCg -3'
miRNA:   3'- -GGgGUCG-UAGUAA-----GUCCGCG-------------UGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 50888 0.66 0.971751
Target:  5'- aCgCCAGgAgcUCAUgCAGGCcacguaccGCGCGGCCg -3'
miRNA:   3'- -GgGGUCgU--AGUAaGUCCG--------CGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 31396 0.66 0.971751
Target:  5'- gUCCCAGCGcgcgaAUUCGuGGaCGCcgucugGCAGCCg -3'
miRNA:   3'- -GGGGUCGUag---UAAGU-CC-GCG------UGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 72634 0.66 0.971751
Target:  5'- gCCCguGCcgCAcUUUguGGGCGC-CAACUa -3'
miRNA:   3'- -GGGguCGuaGU-AAG--UCCGCGuGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 34303 0.66 0.971751
Target:  5'- gCCgUCAGCGagGcUUCGGGCGCGCuuGCg -3'
miRNA:   3'- -GG-GGUCGUagU-AAGUCCGCGUGu-UGg -5'
6402 3' -52.8 NC_001847.1 + 58658 0.66 0.971751
Target:  5'- cUCCCAgGCG-Cug-CAGGCGcCGCuGCCg -3'
miRNA:   3'- -GGGGU-CGUaGuaaGUCCGC-GUGuUGG- -5'
6402 3' -52.8 NC_001847.1 + 105936 0.66 0.971751
Target:  5'- gCUCCAGCccgCcgUCGGGCaGCcccaGCAACg -3'
miRNA:   3'- -GGGGUCGua-GuaAGUCCG-CG----UGUUGg -5'
6402 3' -52.8 NC_001847.1 + 108277 0.66 0.971751
Target:  5'- uUCCC-GCAUCAggcacUCGGGUGcCugGGCg -3'
miRNA:   3'- -GGGGuCGUAGUa----AGUCCGC-GugUUGg -5'
6402 3' -52.8 NC_001847.1 + 120217 0.66 0.971751
Target:  5'- -gCCAGCGguaggCcgUCGcGGCGUAC-GCCa -3'
miRNA:   3'- ggGGUCGUa----GuaAGU-CCGCGUGuUGG- -5'
6402 3' -52.8 NC_001847.1 + 3458 0.66 0.971751
Target:  5'- gCCCaCAGCG-CGUUC---UGCGCGGCCa -3'
miRNA:   3'- -GGG-GUCGUaGUAAGuccGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 82081 0.66 0.971751
Target:  5'- gCUCGGCGUCugggcCAaGCGCGgGGCCa -3'
miRNA:   3'- gGGGUCGUAGuaa--GUcCGCGUgUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.