miRNA display CGI


Results 1 - 20 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6402 3' -52.8 NC_001847.1 + 88499 1.15 0.00223
Target:  5'- aCCCCAGCAUCAUUCAGGCGCACAACCu -3'
miRNA:   3'- -GGGGUCGUAGUAAGUCCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 115705 0.83 0.226625
Target:  5'- gCCCGGCAg----CGGGCGCGCGGCCu -3'
miRNA:   3'- gGGGUCGUaguaaGUCCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 133490 0.83 0.244221
Target:  5'- gCCCGGcCGUCGggCAGGCGCACGuguACCu -3'
miRNA:   3'- gGGGUC-GUAGUaaGUCCGCGUGU---UGG- -5'
6402 3' -52.8 NC_001847.1 + 30677 0.83 0.244221
Target:  5'- gCCCGGcCGUCGggCAGGCGCACGuguACCu -3'
miRNA:   3'- gGGGUC-GUAGUaaGUCCGCGUGU---UGG- -5'
6402 3' -52.8 NC_001847.1 + 28403 0.82 0.256573
Target:  5'- gCCgCGGCGcCAgcgCGGGCGCGCAACCg -3'
miRNA:   3'- -GGgGUCGUaGUaa-GUCCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 131216 0.82 0.256573
Target:  5'- gCCgCGGCGcCAgcgCGGGCGCGCAACCg -3'
miRNA:   3'- -GGgGUCGUaGUaa-GUCCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 49390 0.8 0.341529
Target:  5'- cCCCCGGCguugccGUCAUggCGGGCuccGCGCAGCCu -3'
miRNA:   3'- -GGGGUCG------UAGUAa-GUCCG---CGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 80537 0.8 0.357522
Target:  5'- aCgUCGGCAUCGgcgCGGGCGCGCGccGCCa -3'
miRNA:   3'- -GgGGUCGUAGUaa-GUCCGCGUGU--UGG- -5'
6402 3' -52.8 NC_001847.1 + 90142 0.79 0.391054
Target:  5'- uCCCCuGCcggacugaGUUCGGGCGCAUGGCCa -3'
miRNA:   3'- -GGGGuCGuag-----UAAGUCCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 21946 0.78 0.445035
Target:  5'- gUCCgAGCucGUCGUcCGGGCGCugGGCCg -3'
miRNA:   3'- -GGGgUCG--UAGUAaGUCCGCGugUUGG- -5'
6402 3' -52.8 NC_001847.1 + 56713 0.77 0.473544
Target:  5'- gCCCAGCuccUCcgUCAGcGCGCGC-GCCa -3'
miRNA:   3'- gGGGUCGu--AGuaAGUC-CGCGUGuUGG- -5'
6402 3' -52.8 NC_001847.1 + 85047 0.77 0.48325
Target:  5'- cCCCCAGCAgcuggccgagCA-UCAGGgGCGCGguGCCa -3'
miRNA:   3'- -GGGGUCGUa---------GUaAGUCCgCGUGU--UGG- -5'
6402 3' -52.8 NC_001847.1 + 106281 0.77 0.49305
Target:  5'- gCCCCAGCGccgcCGgcgUCGcGCGCGCGGCCg -3'
miRNA:   3'- -GGGGUCGUa---GUa--AGUcCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 54453 0.77 0.502941
Target:  5'- uUCCAGCcgCAgccgccgCcGGCGCGCAGCCg -3'
miRNA:   3'- gGGGUCGuaGUaa-----GuCCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 48931 0.76 0.512918
Target:  5'- gCCUGGCGggcg-CAGGCGCGCGACUg -3'
miRNA:   3'- gGGGUCGUaguaaGUCCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 91556 0.76 0.522974
Target:  5'- gCCCCAGCGcCAcgcUgGGGCGCGCGucGCCc -3'
miRNA:   3'- -GGGGUCGUaGUa--AgUCCGCGUGU--UGG- -5'
6402 3' -52.8 NC_001847.1 + 105133 0.75 0.563892
Target:  5'- gCCCCAGCAcg---CGGGCGgGCAGCg -3'
miRNA:   3'- -GGGGUCGUaguaaGUCCGCgUGUUGg -5'
6402 3' -52.8 NC_001847.1 + 2320 0.75 0.563892
Target:  5'- gCCCCAGCAcg---CGGGCGgGCAGCg -3'
miRNA:   3'- -GGGGUCGUaguaaGUCCGCgUGUUGg -5'
6402 3' -52.8 NC_001847.1 + 101948 0.75 0.595128
Target:  5'- aCCCGcGCcgCcaagUCGGGCGCAgAGCCg -3'
miRNA:   3'- gGGGU-CGuaGua--AGUCCGCGUgUUGG- -5'
6402 3' -52.8 NC_001847.1 + 103023 0.75 0.595128
Target:  5'- gCCCAGCGcCGgcggCGGGCGggcCGCAGCCg -3'
miRNA:   3'- gGGGUCGUaGUaa--GUCCGC---GUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.