miRNA display CGI


Results 1 - 20 of 423 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6402 3' -52.8 NC_001847.1 + 115705 0.83 0.226625
Target:  5'- gCCCGGCAg----CGGGCGCGCGGCCu -3'
miRNA:   3'- gGGGUCGUaguaaGUCCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 84725 0.73 0.699841
Target:  5'- gCgCCGGUGgugCAggCAGGCGCGCAccaACCg -3'
miRNA:   3'- -GgGGUCGUa--GUaaGUCCGCGUGU---UGG- -5'
6402 3' -52.8 NC_001847.1 + 92989 0.73 0.710137
Target:  5'- cCCgCCGGCAaCGUcCAGGCGCcgGGCCa -3'
miRNA:   3'- -GG-GGUCGUaGUAaGUCCGCGugUUGG- -5'
6402 3' -52.8 NC_001847.1 + 113403 0.66 0.974527
Target:  5'- cCCCCGcGCGcgCGggCcGGCGC-CGGCCc -3'
miRNA:   3'- -GGGGU-CGUa-GUaaGuCCGCGuGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 21946 0.78 0.445035
Target:  5'- gUCCgAGCucGUCGUcCGGGCGCugGGCCg -3'
miRNA:   3'- -GGGgUCG--UAGUAaGUCCGCGugUUGG- -5'
6402 3' -52.8 NC_001847.1 + 85047 0.77 0.48325
Target:  5'- cCCCCAGCAgcuggccgagCA-UCAGGgGCGCGguGCCa -3'
miRNA:   3'- -GGGGUCGUa---------GUaAGUCCgCGUGU--UGG- -5'
6402 3' -52.8 NC_001847.1 + 105133 0.75 0.563892
Target:  5'- gCCCCAGCAcg---CGGGCGgGCAGCg -3'
miRNA:   3'- -GGGGUCGUaguaaGUCCGCgUGUUGg -5'
6402 3' -52.8 NC_001847.1 + 30896 0.75 0.605608
Target:  5'- gCCCGGCcgCAgcccggUgAGGCGCGC-GCCg -3'
miRNA:   3'- gGGGUCGuaGUa-----AgUCCGCGUGuUGG- -5'
6402 3' -52.8 NC_001847.1 + 100871 0.74 0.647653
Target:  5'- gCCgGGgGUCGgcggCAGGgGCGCGGCCg -3'
miRNA:   3'- gGGgUCgUAGUaa--GUCCgCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 120711 0.73 0.689485
Target:  5'- aCCCCGGCG-CcgUCgAGGCaGuCGCGACCc -3'
miRNA:   3'- -GGGGUCGUaGuaAG-UCCG-C-GUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 57075 0.74 0.658153
Target:  5'- aCCCCAGCGcggCGgcCAGcgcuGCGCugGACCg -3'
miRNA:   3'- -GGGGUCGUa--GUaaGUC----CGCGugUUGG- -5'
6402 3' -52.8 NC_001847.1 + 11007 0.74 0.626621
Target:  5'- cUCCCAGCAgagc-CAGGCGCAgGGCg -3'
miRNA:   3'- -GGGGUCGUaguaaGUCCGCGUgUUGg -5'
6402 3' -52.8 NC_001847.1 + 133490 0.83 0.244221
Target:  5'- gCCCGGcCGUCGggCAGGCGCACGuguACCu -3'
miRNA:   3'- gGGGUC-GUAGUaaGUCCGCGUGU---UGG- -5'
6402 3' -52.8 NC_001847.1 + 108517 0.73 0.687408
Target:  5'- aCCCGGCA--GUUCAGGUGCGCcugggagggcuuACCu -3'
miRNA:   3'- gGGGUCGUagUAAGUCCGCGUGu-----------UGG- -5'
6402 3' -52.8 NC_001847.1 + 131216 0.82 0.256573
Target:  5'- gCCgCGGCGcCAgcgCGGGCGCGCAACCg -3'
miRNA:   3'- -GGgGUCGUaGUaa-GUCCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 41007 0.75 0.614007
Target:  5'- gCUCCGGCGUCGUgccguccugcaaCGGGCGCGCcGCg -3'
miRNA:   3'- -GGGGUCGUAGUAa-----------GUCCGCGUGuUGg -5'
6402 3' -52.8 NC_001847.1 + 26535 0.73 0.689485
Target:  5'- cCCCCggAGCA-CGUUUucGGCGCGCGugCg -3'
miRNA:   3'- -GGGG--UCGUaGUAAGu-CCGCGUGUugG- -5'
6402 3' -52.8 NC_001847.1 + 19633 0.73 0.699841
Target:  5'- gCgCCGGCGUC-----GGCGCGCGGCCg -3'
miRNA:   3'- -GgGGUCGUAGuaaguCCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 90142 0.79 0.391054
Target:  5'- uCCCCuGCcggacugaGUUCGGGCGCAUGGCCa -3'
miRNA:   3'- -GGGGuCGuag-----UAAGUCCGCGUGUUGG- -5'
6402 3' -52.8 NC_001847.1 + 48931 0.76 0.512918
Target:  5'- gCCUGGCGggcg-CAGGCGCGCGACUg -3'
miRNA:   3'- gGGGUCGUaguaaGUCCGCGUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.