miRNA display CGI


Results 1 - 20 of 1057 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6402 5' -64.3 NC_001847.1 + 65698 0.65 0.54676
Target:  5'- cCGCgCGcGCGCCGCcguccgccaccGCCGCGCUg -3'
miRNA:   3'- uGCGaGCaCGCGGCGcuc--------CGGCGCGG- -5'
6402 5' -64.3 NC_001847.1 + 93794 0.66 0.544865
Target:  5'- gGCGCgcaagcgCGUGCgGCacagcgaGCGAgagcucgaaccggccGGCgGCGCCg -3'
miRNA:   3'- -UGCGa------GCACG-CGg------CGCU---------------CCGgCGCGG- -5'
6402 5' -64.3 NC_001847.1 + 3799 0.66 0.544865
Target:  5'- cACGacggCGUGCcggcacggggcgucgGCCGCGAGcGUggcguuguuCGCGCCg -3'
miRNA:   3'- -UGCga--GCACG---------------CGGCGCUC-CG---------GCGCGG- -5'
6402 5' -64.3 NC_001847.1 + 66205 0.66 0.541082
Target:  5'- -gGCUgGagGCGCagccCGCGGccGCCGCGCCg -3'
miRNA:   3'- ugCGAgCa-CGCG----GCGCUc-CGGCGCGG- -5'
6402 5' -64.3 NC_001847.1 + 77078 0.66 0.541082
Target:  5'- gGCGCgcgCGcGCGCCaauCGGcGGcCCGCGCg -3'
miRNA:   3'- -UGCGa--GCaCGCGGc--GCU-CC-GGCGCGg -5'
6402 5' -64.3 NC_001847.1 + 125432 0.66 0.541082
Target:  5'- aGCGa--GUG-GCCGCGcAGGgCGCGUCc -3'
miRNA:   3'- -UGCgagCACgCGGCGC-UCCgGCGCGG- -5'
6402 5' -64.3 NC_001847.1 + 23485 0.66 0.541082
Target:  5'- cGCGCUCGgcgcGCGUCGCuacAGGUgGCaCCc -3'
miRNA:   3'- -UGCGAGCa---CGCGGCGc--UCCGgCGcGG- -5'
6402 5' -64.3 NC_001847.1 + 29548 0.66 0.541082
Target:  5'- gGCGCUCGaGUucccCCGCacgGAcGCCGUGCCg -3'
miRNA:   3'- -UGCGAGCaCGc---GGCG---CUcCGGCGCGG- -5'
6402 5' -64.3 NC_001847.1 + 4970 0.66 0.541082
Target:  5'- -gGC-CGgGCGcCCGCGGGGUCGUGaCg -3'
miRNA:   3'- ugCGaGCaCGC-GGCGCUCCGGCGCgG- -5'
6402 5' -64.3 NC_001847.1 + 15793 0.66 0.541082
Target:  5'- aGCGC-CGcGCGgCGgGAGGCgGCGgUg -3'
miRNA:   3'- -UGCGaGCaCGCgGCgCUCCGgCGCgG- -5'
6402 5' -64.3 NC_001847.1 + 64435 0.66 0.541082
Target:  5'- cGCGCU----CGCCGCGGGcGCCccCGCCg -3'
miRNA:   3'- -UGCGAgcacGCGGCGCUC-CGGc-GCGG- -5'
6402 5' -64.3 NC_001847.1 + 50077 0.66 0.541082
Target:  5'- gGCGCggaccCGgGCGCgGCcaaggcuGCCGCGCCg -3'
miRNA:   3'- -UGCGa----GCaCGCGgCGcuc----CGGCGCGG- -5'
6402 5' -64.3 NC_001847.1 + 96900 0.66 0.541082
Target:  5'- gUGCUCGcGCgggacuggcgGCCGCguaGAGGCgCGCgGCCc -3'
miRNA:   3'- uGCGAGCaCG----------CGGCG---CUCCG-GCG-CGG- -5'
6402 5' -64.3 NC_001847.1 + 81865 0.66 0.541082
Target:  5'- aGCGCgCGUuCGUCG-GAcucGGCCGCGCg -3'
miRNA:   3'- -UGCGaGCAcGCGGCgCU---CCGGCGCGg -5'
6402 5' -64.3 NC_001847.1 + 14365 0.66 0.541082
Target:  5'- gACGCUCGcagaUGCcacgGCCGC--GGCCGUggugGCCu -3'
miRNA:   3'- -UGCGAGC----ACG----CGGCGcuCCGGCG----CGG- -5'
6402 5' -64.3 NC_001847.1 + 22619 0.66 0.541082
Target:  5'- aGCGa--GUG-GCCGCGcAGGgCGCGUCc -3'
miRNA:   3'- -UGCgagCACgCGGCGC-UCCgGCGCGG- -5'
6402 5' -64.3 NC_001847.1 + 50227 0.66 0.541082
Target:  5'- cACGCaaGUGCuGCC-CG-GGCCG-GCCu -3'
miRNA:   3'- -UGCGagCACG-CGGcGCuCCGGCgCGG- -5'
6402 5' -64.3 NC_001847.1 + 109935 0.66 0.541082
Target:  5'- cAUGCUCuuugccgGcCGCgCGCGGGGCuCGCugGCCa -3'
miRNA:   3'- -UGCGAGca-----C-GCG-GCGCUCCG-GCG--CGG- -5'
6402 5' -64.3 NC_001847.1 + 35575 0.66 0.541082
Target:  5'- cGCGCuUUGgagcgGCGCCgGCGcaAGGCUGCGgUa -3'
miRNA:   3'- -UGCG-AGCa----CGCGG-CGC--UCCGGCGCgG- -5'
6402 5' -64.3 NC_001847.1 + 51838 0.66 0.541082
Target:  5'- aGCGCcccCGUGCGCgGgucgaucagGAGGCCgcagguguGCGCCu -3'
miRNA:   3'- -UGCGa--GCACGCGgCg--------CUCCGG--------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.