miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6403 5' -53.5 NC_001847.1 + 83768 0.66 0.946569
Target:  5'- gGGACaccgGCGAGG-CAgCCCUCGaaGCGCc -3'
miRNA:   3'- -CCUGa---UGUUCCuGUaGGGAGC--CGUGa -5'
6403 5' -53.5 NC_001847.1 + 66242 0.66 0.946122
Target:  5'- aGGGCUGCAcucuccGGGccgaGCAugcucgcggcgacUCCCgggCGGCGCg -3'
miRNA:   3'- -CCUGAUGU------UCC----UGU-------------AGGGa--GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 30344 0.66 0.945222
Target:  5'- uGGACgACGAGcaccgcgcguugcuGGCGggCCaCUCGGCGCUg -3'
miRNA:   3'- -CCUGaUGUUC--------------CUGUa-GG-GAGCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 14078 0.67 0.941994
Target:  5'- uGGGCcGCucguGGACAUCgCggaGGCGCUg -3'
miRNA:   3'- -CCUGaUGuu--CCUGUAGgGag-CCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 70083 0.67 0.941994
Target:  5'- gGGACUGCucgcgGAGGagGCGUCCgaCGGgACg -3'
miRNA:   3'- -CCUGAUG-----UUCC--UGUAGGgaGCCgUGa -5'
6403 5' -53.5 NC_001847.1 + 18080 0.67 0.937172
Target:  5'- aGGGCggagGCGAGGGCGaggcuuccgccUCCUCGGCGa- -3'
miRNA:   3'- -CCUGa---UGUUCCUGUa----------GGGAGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 95830 0.67 0.937172
Target:  5'- cGGCgGCAGGGGCAagCCa-GGCACg -3'
miRNA:   3'- cCUGaUGUUCCUGUagGGagCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 70252 0.67 0.937172
Target:  5'- cGGGCgGCGGGcgcgcGGCGUugCUCUCGGCGCg -3'
miRNA:   3'- -CCUGaUGUUC-----CUGUA--GGGAGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 30696 0.67 0.926781
Target:  5'- gGGAg-ACGAGGGCAg-CC-CGGCGCUc -3'
miRNA:   3'- -CCUgaUGUUCCUGUagGGaGCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 74714 0.67 0.921211
Target:  5'- cGACgcgcGCGuGGACGccgagCCUUCGGCGCUu -3'
miRNA:   3'- cCUGa---UGUuCCUGUa----GGGAGCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 86246 0.67 0.921211
Target:  5'- aGACUGCGaacAGGGCAcugcgCCCcCGcGCGCUg -3'
miRNA:   3'- cCUGAUGU---UCCUGUa----GGGaGC-CGUGA- -5'
6403 5' -53.5 NC_001847.1 + 65197 0.68 0.91178
Target:  5'- uGGGCUGCugcaccucaaauuGGAuCGUgCCCUCGuGCACg -3'
miRNA:   3'- -CCUGAUGuu-----------CCU-GUA-GGGAGC-CGUGa -5'
6403 5' -53.5 NC_001847.1 + 45432 0.68 0.909323
Target:  5'- aGGCUugAgcccAGGGCG-CCCgucgCGGCGCg -3'
miRNA:   3'- cCUGAugU----UCCUGUaGGGa---GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 86561 0.68 0.909323
Target:  5'- gGGACgcCGAGGACggCgCCgaagacggCGGCGCUu -3'
miRNA:   3'- -CCUGauGUUCCUGuaG-GGa-------GCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 114809 0.68 0.903008
Target:  5'- gGGGgUGCccuggcGGuACAuggUCCCUCGGCGCg -3'
miRNA:   3'- -CCUgAUGuu----CC-UGU---AGGGAGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 80835 0.68 0.903008
Target:  5'- cGACUGgGGGGGCAgaUCCgggcggCGGCGCg -3'
miRNA:   3'- cCUGAUgUUCCUGU--AGGga----GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 111050 0.68 0.903008
Target:  5'- cGGCUACGAGGGCGUggUCCUCu-CGCUg -3'
miRNA:   3'- cCUGAUGUUCCUGUA--GGGAGccGUGA- -5'
6403 5' -53.5 NC_001847.1 + 130161 0.68 0.902363
Target:  5'- -aGCUGCGAGGACGUcagcgacCCCgcgGGCGCc -3'
miRNA:   3'- ccUGAUGUUCCUGUA-------GGGag-CCGUGa -5'
6403 5' -53.5 NC_001847.1 + 32529 0.68 0.896449
Target:  5'- cGGCUGucgGAGGcgaugcgcgcGCAgCCCUCGGCGCUg -3'
miRNA:   3'- cCUGAUg--UUCC----------UGUaGGGAGCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 130114 0.68 0.896449
Target:  5'- gGGACgagUACGAGaGCG-CCCUCGcGCGCg -3'
miRNA:   3'- -CCUG---AUGUUCcUGUaGGGAGC-CGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.