miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6404 5' -59.9 NC_001847.1 + 8444 0.66 0.74382
Target:  5'- gGAGgcggcGCCggGUCGgaggcgGCGCcgggccggGGGCGGCGc -3'
miRNA:   3'- aCUCa----CGGa-CAGCa-----CGCG--------CCCGCUGC- -5'
6404 5' -59.9 NC_001847.1 + 67644 0.66 0.74382
Target:  5'- cGAccGUGCCcucGUCGagGgGCGcGGCGGCGc -3'
miRNA:   3'- aCU--CACGGa--CAGCa-CgCGC-CCGCUGC- -5'
6404 5' -59.9 NC_001847.1 + 111257 0.66 0.74382
Target:  5'- gGAGgcggcGCCggGUCGgaggcgGCGCcgggccggGGGCGGCGc -3'
miRNA:   3'- aCUCa----CGGa-CAGCa-----CGCG--------CCCGCUGC- -5'
6404 5' -59.9 NC_001847.1 + 42324 0.66 0.734274
Target:  5'- cGAGUGUU--UCGUGCuGUGGGCGcccguguggcGCGg -3'
miRNA:   3'- aCUCACGGacAGCACG-CGCCCGC----------UGC- -5'
6404 5' -59.9 NC_001847.1 + 118825 0.66 0.734274
Target:  5'- gUGAGcuUGCCUacaccCGcGcCGCGGGUGACGg -3'
miRNA:   3'- -ACUC--ACGGAca---GCaC-GCGCCCGCUGC- -5'
6404 5' -59.9 NC_001847.1 + 107430 0.66 0.724642
Target:  5'- ----gGCCaGcUCG-GCGCGGGCGGCc -3'
miRNA:   3'- acucaCGGaC-AGCaCGCGCCCGCUGc -5'
6404 5' -59.9 NC_001847.1 + 2561 0.66 0.724642
Target:  5'- cGGGcUGUCU-UCG-GCGCGGGCGccugcGCGg -3'
miRNA:   3'- aCUC-ACGGAcAGCaCGCGCCCGC-----UGC- -5'
6404 5' -59.9 NC_001847.1 + 36838 0.66 0.724642
Target:  5'- cUGGGgGCUggcgGaCGUGCGCucGGCGGCGg -3'
miRNA:   3'- -ACUCaCGGa---CaGCACGCGc-CCGCUGC- -5'
6404 5' -59.9 NC_001847.1 + 63552 0.66 0.724642
Target:  5'- ----cGCCUGggcCG-GCGcCGGGCGGCa -3'
miRNA:   3'- acucaCGGACa--GCaCGC-GCCCGCUGc -5'
6404 5' -59.9 NC_001847.1 + 68835 0.66 0.724642
Target:  5'- aGGGcGCCgcgaagagcUCGgGCGCGaGGCGGCGg -3'
miRNA:   3'- aCUCaCGGac-------AGCaCGCGC-CCGCUGC- -5'
6404 5' -59.9 NC_001847.1 + 133557 0.66 0.724642
Target:  5'- cGAGUGUguauaguacUUGUUGgggacacagGCGCGGGCG-CGc -3'
miRNA:   3'- aCUCACG---------GACAGCa--------CGCGCCCGCuGC- -5'
6404 5' -59.9 NC_001847.1 + 4617 0.66 0.724642
Target:  5'- ----gGCCaGcUCG-GCGCGGGCGGCc -3'
miRNA:   3'- acucaCGGaC-AGCaCGCGCCCGCUGc -5'
6404 5' -59.9 NC_001847.1 + 120925 0.66 0.724642
Target:  5'- cGAGgGCggGgCGggcGCGCGGGCGugGu -3'
miRNA:   3'- aCUCaCGgaCaGCa--CGCGCCCGCugC- -5'
6404 5' -59.9 NC_001847.1 + 21855 0.66 0.724642
Target:  5'- -cGGUGCagcagGUgGUGCGgGGGCuGCGg -3'
miRNA:   3'- acUCACGga---CAgCACGCgCCCGcUGC- -5'
6404 5' -59.9 NC_001847.1 + 33574 0.66 0.714935
Target:  5'- gGAG-GCg-GcCGUGCGCGGuGcCGACGa -3'
miRNA:   3'- aCUCaCGgaCaGCACGCGCC-C-GCUGC- -5'
6404 5' -59.9 NC_001847.1 + 74709 0.66 0.714935
Target:  5'- ---uUGCCUGUaCGggGCGCuGGCGGCc -3'
miRNA:   3'- acucACGGACA-GCa-CGCGcCCGCUGc -5'
6404 5' -59.9 NC_001847.1 + 99791 0.66 0.714935
Target:  5'- gGGGgcagcGCCUGUgGUGCGggguCGGaGCGGCc -3'
miRNA:   3'- aCUCa----CGGACAgCACGC----GCC-CGCUGc -5'
6404 5' -59.9 NC_001847.1 + 55697 0.66 0.714935
Target:  5'- gGGGUGCgUGcaaaCG-GCGCgaggGGGCGACa -3'
miRNA:   3'- aCUCACGgACa---GCaCGCG----CCCGCUGc -5'
6404 5' -59.9 NC_001847.1 + 101464 0.66 0.70516
Target:  5'- cGAGcGCCUG-CGccucuagccccGCGCGGGCcGCGg -3'
miRNA:   3'- aCUCaCGGACaGCa----------CGCGCCCGcUGC- -5'
6404 5' -59.9 NC_001847.1 + 53303 0.66 0.695326
Target:  5'- cGAucGCCgccaGUGCgGCGGGCGACa -3'
miRNA:   3'- aCUcaCGGacagCACG-CGCCCGCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.