miRNA display CGI

Results 1 - 20 of 1248 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6405	3'	-64	NC_001847.1	+	67495	0.66	0.543745
	Target:  5'- cCGcCGCGCCCcucgacgagggcacgGuCGCGG-ACGCGGCCa- -3' miRNA:   3'- -GC-GCGCGGG---------------C-GCGUCgUGCGCUGGag -5'
6405	3'	-64	NC_001847.1	+	129426	0.66	0.543745
	Target:  5'- uGCGaCGCCCGCcugcugcgggguGUccaagcggcuacuugAGCugGCGGCCg- -3' miRNA:   3'- gCGC-GCGGGCG------------CG---------------UCGugCGCUGGag -5'
6405	3'	-64	NC_001847.1	+	14169	0.66	0.543745
	Target:  5'- gGgGCGgCCGCGCuaaaggcacgggaggGGCugGCGGCg-- -3' miRNA:   3'- gCgCGCgGGCGCG---------------UCGugCGCUGgag -5'
6405	3'	-64	NC_001847.1	+	13433	0.66	0.543745
	Target:  5'- aGCgGgGCCUGCGCuggcuguaucuagcgGGCGCGC-ACCUg -3' miRNA:   3'- gCG-CgCGGGCGCG---------------UCGUGCGcUGGAg -5'
6405	3'	-64	NC_001847.1	+	24133	0.66	0.542792
	Target:  5'- cCGCGCGCgaacuugCUGCGCgcaaaguccucgaacGGCGCGCaGCCg- -3' miRNA:   3'- -GCGCGCG-------GGCGCG---------------UCGUGCGcUGGag -5'
6405	3'	-64	NC_001847.1	+	89139	0.66	0.542792
	Target:  5'- gCGCGCGCUCGUGCccgucaacuuugacuGcgucgucgccgacGCGCGCG-CCUUu -3' miRNA:   3'- -GCGCGCGGGCGCG---------------U-------------CGUGCGCuGGAG- -5'
6405	3'	-64	NC_001847.1	+	62493	0.66	0.539936
	Target:  5'- gCGgGCGgCCGCGgGGUG-GCGGCCa- -3' miRNA:   3'- -GCgCGCgGGCGCgUCGUgCGCUGGag -5'
6405	3'	-64	NC_001847.1	+	53019	0.66	0.539936
	Target:  5'- aGCgGCGgCCGCu--GCGCGCucgGGCCUCg -3' miRNA:   3'- gCG-CGCgGGCGcguCGUGCG---CUGGAG- -5'
6405	3'	-64	NC_001847.1	+	19361	0.66	0.539936
	Target:  5'- gCGCGCGCCCGacgGUGGCcagggcCGCcGCCaUCa -3' miRNA:   3'- -GCGCGCGGGCg--CGUCGu-----GCGcUGG-AG- -5'
6405	3'	-64	NC_001847.1	+	33487	0.66	0.539936
	Target:  5'- gGCGaUGUCCGCgGCGGCGgCGCGGgCg- -3' miRNA:   3'- gCGC-GCGGGCG-CGUCGU-GCGCUgGag -5'
6405	3'	-64	NC_001847.1	+	34878	0.66	0.539936
	Target:  5'- gGcCGUGCUCGCGUucaacccGCACGCGcCCg- -3' miRNA:   3'- gC-GCGCGGGCGCGu------CGUGCGCuGGag -5'
6405	3'	-64	NC_001847.1	+	47013	0.66	0.539936
	Target:  5'- aGCGCGCCUugugGCucauCAGCAgGCGAUacaaCUCg -3' miRNA:   3'- gCGCGCGGG----CGc---GUCGUgCGCUG----GAG- -5'
6405	3'	-64	NC_001847.1	+	49035	0.66	0.539936
	Target:  5'- aGC-CGCUCGUGCAGCguGCGCGuaaagcugcGCCg- -3' miRNA:   3'- gCGcGCGGGCGCGUCG--UGCGC---------UGGag -5'
6405	3'	-64	NC_001847.1	+	16356	0.66	0.539936
	Target:  5'- aGCGCGCCCaGCaCGGCcaAUGuCGGCCc- -3' miRNA:   3'- gCGCGCGGG-CGcGUCG--UGC-GCUGGag -5'
6405	3'	-64	NC_001847.1	+	62895	0.66	0.539936
	Target:  5'- uCGgGUGCagCGgGUGGCGCGgGugCUCg -3' miRNA:   3'- -GCgCGCGg-GCgCGUCGUGCgCugGAG- -5'
6405	3'	-64	NC_001847.1	+	111373	0.66	0.539936
	Target:  5'- -nCGCGCCCGgGCAuccGCugGCcaaguucaagacGGCCUUc -3' miRNA:   3'- gcGCGCGGGCgCGU---CGugCG------------CUGGAG- -5'
6405	3'	-64	NC_001847.1	+	130342	0.66	0.539936
	Target:  5'- uCGCGCGCCuCGUcCAGCAUGC--CgUCa -3' miRNA:   3'- -GCGCGCGG-GCGcGUCGUGCGcuGgAG- -5'
6405	3'	-64	NC_001847.1	+	14647	0.66	0.539936
	Target:  5'- uCGCGCGCCgcuCGCugcgaGCGGgGCGCGugUc- -3' miRNA:   3'- -GCGCGCGG---GCG-----CGUCgUGCGCugGag -5'
6405	3'	-64	NC_001847.1	+	49950	0.66	0.539936
	Target:  5'- cCGgGCuGCCCgGCGCcgAGUACGCGcagGCCg- -3' miRNA:   3'- -GCgCG-CGGG-CGCG--UCGUGCGC---UGGag -5'
6405	3'	-64	NC_001847.1	+	37957	0.66	0.539936
	Target:  5'- uCGCGaGCaagCCGCuacGCAGCGCGCcgcccuGCCUCa -3' miRNA:   3'- -GCGCgCG---GGCG---CGUCGUGCGc-----UGGAG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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