miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6405 5' -53 NC_001847.1 + 67043 0.66 0.966507
Target:  5'- -cGAAGUCAucgucaccaccGCUcGCGCCGCGG-CGu- -3'
miRNA:   3'- acCUUCAGU-----------UGA-CGUGGCGCCuGUug -5'
6405 5' -53 NC_001847.1 + 95655 0.66 0.966507
Target:  5'- cGGGAGc---CUGCGCgGCGGGCu-- -3'
miRNA:   3'- aCCUUCaguuGACGUGgCGCCUGuug -5'
6405 5' -53 NC_001847.1 + 3593 0.66 0.966507
Target:  5'- aGGAAGUCGGC-GuCGuuGCGG-CAAa -3'
miRNA:   3'- aCCUUCAGUUGaC-GUggCGCCuGUUg -5'
6405 5' -53 NC_001847.1 + 42598 0.66 0.966507
Target:  5'- cGGggGUgGugacagggACgGCGCCGCcgcggagggGGGCGGCa -3'
miRNA:   3'- aCCuuCAgU--------UGaCGUGGCG---------CCUGUUG- -5'
6405 5' -53 NC_001847.1 + 124906 0.66 0.966507
Target:  5'- cGGGcccGG-CAGgcGCGCCGgGGGCGACa -3'
miRNA:   3'- aCCU---UCaGUUgaCGUGGCgCCUGUUG- -5'
6405 5' -53 NC_001847.1 + 70180 0.66 0.966507
Target:  5'- cUGGAuucGUUcgAGCgcgGCACgGCGGAcCAGCu -3'
miRNA:   3'- -ACCUu--CAG--UUGa--CGUGgCGCCU-GUUG- -5'
6405 5' -53 NC_001847.1 + 98238 0.66 0.966507
Target:  5'- aGGGAGgCGACgccgugGCGgCG-GGGCAGCg -3'
miRNA:   3'- aCCUUCaGUUGa-----CGUgGCgCCUGUUG- -5'
6405 5' -53 NC_001847.1 + 17516 0.66 0.966507
Target:  5'- cGGAGGUucCAAagcCACCGCGGAUg-- -3'
miRNA:   3'- aCCUUCA--GUUgacGUGGCGCCUGuug -5'
6405 5' -53 NC_001847.1 + 22093 0.66 0.966507
Target:  5'- cGGGcccGG-CAGgcGCGCCGgGGGCGACa -3'
miRNA:   3'- aCCU---UCaGUUgaCGUGGCgCCUGUUG- -5'
6405 5' -53 NC_001847.1 + 33631 0.66 0.966507
Target:  5'- -aGAGGUCGACaaaCAcCCGCGGuGCAGCc -3'
miRNA:   3'- acCUUCAGUUGac-GU-GGCGCC-UGUUG- -5'
6405 5' -53 NC_001847.1 + 73153 0.66 0.966507
Target:  5'- aGGAGG-CGGC-GCGCCgggcggaggagGCGGACGcgGCg -3'
miRNA:   3'- aCCUUCaGUUGaCGUGG-----------CGCCUGU--UG- -5'
6405 5' -53 NC_001847.1 + 80853 0.66 0.966507
Target:  5'- gUGGuGGUCGua-GCACgCGCGGAUgAGCg -3'
miRNA:   3'- -ACCuUCAGUugaCGUG-GCGCCUG-UUG- -5'
6405 5' -53 NC_001847.1 + 95152 0.66 0.966507
Target:  5'- uUGGggGU--GCcgGCAUgGCGGGgGGCg -3'
miRNA:   3'- -ACCuuCAguUGa-CGUGgCGCCUgUUG- -5'
6405 5' -53 NC_001847.1 + 33573 0.66 0.966507
Target:  5'- cGGAGG-CGGCcgUGCGCgGUGccGACGACg -3'
miRNA:   3'- aCCUUCaGUUG--ACGUGgCGC--CUGUUG- -5'
6405 5' -53 NC_001847.1 + 59903 0.66 0.963115
Target:  5'- aGGAGGgCGGC-GCGCgCGCGcGGCGAg -3'
miRNA:   3'- aCCUUCaGUUGaCGUG-GCGC-CUGUUg -5'
6405 5' -53 NC_001847.1 + 95391 0.66 0.963115
Target:  5'- cGGcucugaGGCcgGCGCCGgGGACAACg -3'
miRNA:   3'- aCCuucag-UUGa-CGUGGCgCCUGUUG- -5'
6405 5' -53 NC_001847.1 + 74702 0.66 0.963115
Target:  5'- cGGggG-CAGCgccgacGCGCgCGUGGACGc- -3'
miRNA:   3'- aCCuuCaGUUGa-----CGUG-GCGCCUGUug -5'
6405 5' -53 NC_001847.1 + 71023 0.66 0.963115
Target:  5'- cGGcGGcCGcgcacGCgucugGCGCCGCGGACAc- -3'
miRNA:   3'- aCCuUCaGU-----UGa----CGUGGCGCCUGUug -5'
6405 5' -53 NC_001847.1 + 78334 0.66 0.963115
Target:  5'- cGGGcc-CGGCUuggGCGCCGCGG-CGGCg -3'
miRNA:   3'- aCCUucaGUUGA---CGUGGCGCCuGUUG- -5'
6405 5' -53 NC_001847.1 + 52897 0.66 0.963115
Target:  5'- aUGGccAGUC--CUaGguCCGCGGGCAGCg -3'
miRNA:   3'- -ACCu-UCAGuuGA-CguGGCGCCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.