miRNA display CGI


Results 1 - 20 of 1168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6406 3' -69.8 NC_001847.1 + 108634 0.66 0.342041
Target:  5'- aCGGCGGGCgaCGCugcagaaGUGGCcgGGGC-CGCg -3'
miRNA:   3'- cGCCGCCCG--GCGc------CGCCG--CCCGcGCG- -5'
6406 3' -69.8 NC_001847.1 + 5619 0.66 0.342041
Target:  5'- -gGGCGuGGgCGCcGCGGUcccGCGCGCg -3'
miRNA:   3'- cgCCGC-CCgGCGcCGCCGcc-CGCGCG- -5'
6406 3' -69.8 NC_001847.1 + 86193 0.66 0.342041
Target:  5'- -gGGCGcGGCCuacCGGCGGCugcuGGUGCa- -3'
miRNA:   3'- cgCCGC-CCGGc--GCCGCCGc---CCGCGcg -5'
6406 3' -69.8 NC_001847.1 + 80473 0.66 0.342041
Target:  5'- cGCcGuCGGGCCGCGcuccccguuccGCaGCGcGGCGCuGCc -3'
miRNA:   3'- -CGcC-GCCCGGCGC-----------CGcCGC-CCGCG-CG- -5'
6406 3' -69.8 NC_001847.1 + 36145 0.66 0.342041
Target:  5'- cGCGgacGCGGGCCugcaGCGGCuGCaGGCaaCGCu -3'
miRNA:   3'- -CGC---CGCCCGG----CGCCGcCGcCCGc-GCG- -5'
6406 3' -69.8 NC_001847.1 + 132935 0.66 0.342041
Target:  5'- cGCuGGCGGccuacuGCCGCcccgaggucGCGGCGcGGCuCGCg -3'
miRNA:   3'- -CG-CCGCC------CGGCGc--------CGCCGC-CCGcGCG- -5'
6406 3' -69.8 NC_001847.1 + 101367 0.66 0.342041
Target:  5'- uGCGcGCGcuugcGCCGCGGgGGCugcccgcGGCGcCGCc -3'
miRNA:   3'- -CGC-CGCc----CGGCGCCgCCGc------CCGC-GCG- -5'
6406 3' -69.8 NC_001847.1 + 59575 0.66 0.342041
Target:  5'- cCGGCGGaaGCUcUGGCuGGCGuGCGCGUc -3'
miRNA:   3'- cGCCGCC--CGGcGCCG-CCGCcCGCGCG- -5'
6406 3' -69.8 NC_001847.1 + 102067 0.66 0.342041
Target:  5'- uCGGCagcaaGGGCa--GGC-GCGGGCcGCGCg -3'
miRNA:   3'- cGCCG-----CCCGgcgCCGcCGCCCG-CGCG- -5'
6406 3' -69.8 NC_001847.1 + 107141 0.66 0.342041
Target:  5'- cGCGGCacGCCGCGcGCugcaGCGcGGCccaGCGCg -3'
miRNA:   3'- -CGCCGccCGGCGC-CGc---CGC-CCG---CGCG- -5'
6406 3' -69.8 NC_001847.1 + 38599 0.66 0.342041
Target:  5'- cGCGcGCGcGGCUGCa-CaGCcGGCGCGCg -3'
miRNA:   3'- -CGC-CGC-CCGGCGccGcCGcCCGCGCG- -5'
6406 3' -69.8 NC_001847.1 + 33569 0.66 0.342041
Target:  5'- cGCGGgGGGCgucuggCGCGGCccgGGCucGGCG-GCc -3'
miRNA:   3'- -CGCCgCCCG------GCGCCG---CCGc-CCGCgCG- -5'
6406 3' -69.8 NC_001847.1 + 30122 0.66 0.342041
Target:  5'- cGCuGGCGGccuacuGCCGCcccgaggucGCGGCGcGGCuCGCg -3'
miRNA:   3'- -CG-CCGCC------CGGCGc--------CGCCGC-CCGcGCG- -5'
6406 3' -69.8 NC_001847.1 + 126130 0.66 0.342041
Target:  5'- aGCaGgGGGUCGCGGCcGCGcacgauGGCaaacaGCGCg -3'
miRNA:   3'- -CGcCgCCCGGCGCCGcCGC------CCG-----CGCG- -5'
6406 3' -69.8 NC_001847.1 + 69934 0.66 0.342041
Target:  5'- -aGGCGGuaaucaugcGCaCGuUGGCGuccGCGGGCGCGa -3'
miRNA:   3'- cgCCGCC---------CG-GC-GCCGC---CGCCCGCGCg -5'
6406 3' -69.8 NC_001847.1 + 11838 0.66 0.341342
Target:  5'- cUGGCGuaaGGCCucUGGCGccgcccuGCGGGCgGCGCg -3'
miRNA:   3'- cGCCGC---CCGGc-GCCGC-------CGCCCG-CGCG- -5'
6406 3' -69.8 NC_001847.1 + 119260 0.66 0.341342
Target:  5'- aUGGCGGcGCC-CGcGCGGCucgucgaGGGCcaguaccgacGCGCg -3'
miRNA:   3'- cGCCGCC-CGGcGC-CGCCG-------CCCG----------CGCG- -5'
6406 3' -69.8 NC_001847.1 + 26450 0.66 0.341342
Target:  5'- aGCGGUaGGCCGC-GCGGCuGuucgccaGCGCGg -3'
miRNA:   3'- -CGCCGcCCGGCGcCGCCGcC-------CGCGCg -5'
6406 3' -69.8 NC_001847.1 + 19863 0.66 0.341342
Target:  5'- cGCuGUGGacacGCUcaucaugGCGGCgcuGGCGGGCGCGa -3'
miRNA:   3'- -CGcCGCC----CGG-------CGCCG---CCGCCCGCGCg -5'
6406 3' -69.8 NC_001847.1 + 37267 0.66 0.33786
Target:  5'- aGCaGCacGGCCGgGGCGGCgucgacuggagcauuGuauaaGGCGCGCg -3'
miRNA:   3'- -CGcCGc-CCGGCgCCGCCG---------------C-----CCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.