miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6406 5' -57.4 NC_001847.1 + 75825 0.66 0.842286
Target:  5'- gGUACgGCGCCGCCGgCgccgCG-CCUggcaCCc -3'
miRNA:   3'- -UAUGaCGUGGCGGCgGa---GCaGGAa---GG- -5'
6406 5' -57.4 NC_001847.1 + 54075 0.66 0.842286
Target:  5'- ----aGCGCCGUCGCCg---CCUUCg -3'
miRNA:   3'- uaugaCGUGGCGGCGGagcaGGAAGg -5'
6406 5' -57.4 NC_001847.1 + 3357 0.66 0.842286
Target:  5'- -cGCUGCcgGCCGCCGCaauccgCGcgCCgagCCg -3'
miRNA:   3'- uaUGACG--UGGCGGCGga----GCa-GGaa-GG- -5'
6406 5' -57.4 NC_001847.1 + 134594 0.66 0.842286
Target:  5'- -cGCUgGCGuCCGCCGCCaCGUUCc-CCg -3'
miRNA:   3'- uaUGA-CGU-GGCGGCGGaGCAGGaaGG- -5'
6406 5' -57.4 NC_001847.1 + 60622 0.66 0.842286
Target:  5'- -gACUcaaGCGCCG-CGUCUCGUCCa--- -3'
miRNA:   3'- uaUGA---CGUGGCgGCGGAGCAGGaagg -5'
6406 5' -57.4 NC_001847.1 + 101984 0.66 0.842286
Target:  5'- -cGCUGCagcggcgcaACCGCCGCgCUCG-CCa--- -3'
miRNA:   3'- uaUGACG---------UGGCGGCG-GAGCaGGaagg -5'
6406 5' -57.4 NC_001847.1 + 31781 0.66 0.842286
Target:  5'- -cGCUgGCGuCCGCCGCCaCGUUCc-CCg -3'
miRNA:   3'- uaUGA-CGU-GGCGGCGGaGCAGGaaGG- -5'
6406 5' -57.4 NC_001847.1 + 53961 0.66 0.842286
Target:  5'- -gGCUgGCGCCGCCGCga-GcCCU-CCg -3'
miRNA:   3'- uaUGA-CGUGGCGGCGgagCaGGAaGG- -5'
6406 5' -57.4 NC_001847.1 + 123491 0.66 0.837378
Target:  5'- --cCUuCACCGCCGCCggaaggcuccaucgUGUCCaUCCc -3'
miRNA:   3'- uauGAcGUGGCGGCGGa-------------GCAGGaAGG- -5'
6406 5' -57.4 NC_001847.1 + 31562 0.66 0.834068
Target:  5'- -gGCcgGCGCCGCCggcggcgggccgGCCUCGcCCUa-- -3'
miRNA:   3'- uaUGa-CGUGGCGG------------CGGAGCaGGAagg -5'
6406 5' -57.4 NC_001847.1 + 118481 0.66 0.834068
Target:  5'- -gGCUGCGCgacgcgcccgCGCCGCCaCGUUCg-CCa -3'
miRNA:   3'- uaUGACGUG----------GCGGCGGaGCAGGaaGG- -5'
6406 5' -57.4 NC_001847.1 + 58390 0.66 0.834068
Target:  5'- uUGCgUGCcccCCGCCcgagcGCCcgacCGUCCUUCCc -3'
miRNA:   3'- uAUG-ACGu--GGCGG-----CGGa---GCAGGAAGG- -5'
6406 5' -57.4 NC_001847.1 + 43329 0.66 0.834068
Target:  5'- cGUGCUGCcaucGCCGCgcggcggcgaCGCCgacgaagCGUCCgcggCCa -3'
miRNA:   3'- -UAUGACG----UGGCG----------GCGGa------GCAGGaa--GG- -5'
6406 5' -57.4 NC_001847.1 + 110020 0.66 0.834068
Target:  5'- -aGCcGCgGCCGCCGCC-CGcUCuCUUCUc -3'
miRNA:   3'- uaUGaCG-UGGCGGCGGaGC-AG-GAAGG- -5'
6406 5' -57.4 NC_001847.1 + 134375 0.66 0.834068
Target:  5'- -gGCcgGCGCCGCCggcggcgggccgGCCUCGcCCUa-- -3'
miRNA:   3'- uaUGa-CGUGGCGG------------CGGAGCaGGAagg -5'
6406 5' -57.4 NC_001847.1 + 93332 0.66 0.834068
Target:  5'- ----cGCGCCGcCCGCCcgcgCGgugcgUCUUCCa -3'
miRNA:   3'- uaugaCGUGGC-GGCGGa---GCa----GGAAGG- -5'
6406 5' -57.4 NC_001847.1 + 7207 0.66 0.834068
Target:  5'- -aGCcGCgGCCGCCGCC-CGcUCuCUUCUc -3'
miRNA:   3'- uaUGaCG-UGGCGGCGGaGC-AG-GAAGG- -5'
6406 5' -57.4 NC_001847.1 + 50558 0.66 0.834068
Target:  5'- cUGCUGgACCGCgGCgUCG-CCU-CUg -3'
miRNA:   3'- uAUGACgUGGCGgCGgAGCaGGAaGG- -5'
6406 5' -57.4 NC_001847.1 + 60461 0.66 0.834068
Target:  5'- ----aGCGCCgGCCGCC--GUCCUgCCg -3'
miRNA:   3'- uaugaCGUGG-CGGCGGagCAGGAaGG- -5'
6406 5' -57.4 NC_001847.1 + 116377 0.66 0.834068
Target:  5'- -cGCUGUcgGCCGCCGCCUUagCCg--- -3'
miRNA:   3'- uaUGACG--UGGCGGCGGAGcaGGaagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.