miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6406 5' -57.4 NC_001847.1 + 48645 0.78 0.225123
Target:  5'- -gGCgggGCGCCGCCGCCcccgcagccucgUCGUCCgugCCg -3'
miRNA:   3'- uaUGa--CGUGGCGGCGG------------AGCAGGaa-GG- -5'
6406 5' -57.4 NC_001847.1 + 83500 0.71 0.520927
Target:  5'- -cGCaGCGCCGCgGCgCUgCGUgCCUUCCu -3'
miRNA:   3'- uaUGaCGUGGCGgCG-GA-GCA-GGAAGG- -5'
6406 5' -57.4 NC_001847.1 + 23461 0.71 0.540727
Target:  5'- -cGCcGCGuCCGCCGCCUCGgCCaUCg -3'
miRNA:   3'- uaUGaCGU-GGCGGCGGAGCaGGaAGg -5'
6406 5' -57.4 NC_001847.1 + 60622 0.66 0.842286
Target:  5'- -gACUcaaGCGCCG-CGUCUCGUCCa--- -3'
miRNA:   3'- uaUGA---CGUGGCgGCGGAGCAGGaagg -5'
6406 5' -57.4 NC_001847.1 + 105258 0.75 0.328652
Target:  5'- -gGCaGgGCCGCCGCCUCG-CCgUCCc -3'
miRNA:   3'- uaUGaCgUGGCGGCGGAGCaGGaAGG- -5'
6406 5' -57.4 NC_001847.1 + 112884 0.75 0.328652
Target:  5'- -cGCUGCGCCGCgCGCUcgUCGgcUUCUUCCu -3'
miRNA:   3'- uaUGACGUGGCG-GCGG--AGC--AGGAAGG- -5'
6406 5' -57.4 NC_001847.1 + 9623 0.73 0.409401
Target:  5'- -aGCUGCGcCCGCCGCCgCG-CCggCCc -3'
miRNA:   3'- uaUGACGU-GGCGGCGGaGCaGGaaGG- -5'
6406 5' -57.4 NC_001847.1 + 84606 0.73 0.426973
Target:  5'- -aGCaGCGCCGCUGCgUCG-CCUUCg -3'
miRNA:   3'- uaUGaCGUGGCGGCGgAGCaGGAAGg -5'
6406 5' -57.4 NC_001847.1 + 61446 0.72 0.482234
Target:  5'- cGUACUGCACgCGCCggGCCgCG-CCUUCa -3'
miRNA:   3'- -UAUGACGUG-GCGG--CGGaGCaGGAAGg -5'
6406 5' -57.4 NC_001847.1 + 53249 0.71 0.520927
Target:  5'- -gGCUGCGgCGCCGCCUCGgcggggCgCUgcgcgCCc -3'
miRNA:   3'- uaUGACGUgGCGGCGGAGCa-----G-GAa----GG- -5'
6406 5' -57.4 NC_001847.1 + 134711 0.72 0.501416
Target:  5'- cUGCUGcCGCCGCCGCCgccccCGcCCgccCCg -3'
miRNA:   3'- uAUGAC-GUGGCGGCGGa----GCaGGaa-GG- -5'
6406 5' -57.4 NC_001847.1 + 134681 0.72 0.472776
Target:  5'- cUGCUGcCGCCGCCGCCgcCG-CCgccgCCg -3'
miRNA:   3'- uAUGAC-GUGGCGGCGGa-GCaGGaa--GG- -5'
6406 5' -57.4 NC_001847.1 + 121127 0.76 0.299815
Target:  5'- -cGCUGCGCCGCCGCCUgcugcCGUgCUcUCg -3'
miRNA:   3'- uaUGACGUGGCGGCGGA-----GCAgGAaGG- -5'
6406 5' -57.4 NC_001847.1 + 80458 0.72 0.501416
Target:  5'- -cGCggGCGCCGCCGCCgcCGUCgggCCg -3'
miRNA:   3'- uaUGa-CGUGGCGGCGGa-GCAGgaaGG- -5'
6406 5' -57.4 NC_001847.1 + 48777 0.76 0.306837
Target:  5'- -cGCgGC-CCGCCGCCUCGUCUgcgggcgCCu -3'
miRNA:   3'- uaUGaCGuGGCGGCGGAGCAGGaa-----GG- -5'
6406 5' -57.4 NC_001847.1 + 9686 0.73 0.444984
Target:  5'- -aGCUGcCGCCGacCCGCC-CGUCCU-CCg -3'
miRNA:   3'- uaUGAC-GUGGC--GGCGGaGCAGGAaGG- -5'
6406 5' -57.4 NC_001847.1 + 10695 0.71 0.511133
Target:  5'- -cGCUucccGCACCGCCgGCCUCGgaggagggCCUcCCg -3'
miRNA:   3'- uaUGA----CGUGGCGG-CGGAGCa-------GGAaGG- -5'
6406 5' -57.4 NC_001847.1 + 85307 0.71 0.530793
Target:  5'- -aGCaGCACgGCCGCCUgcagCGUCCaggCCg -3'
miRNA:   3'- uaUGaCGUGgCGGCGGA----GCAGGaa-GG- -5'
6406 5' -57.4 NC_001847.1 + 81376 0.75 0.313983
Target:  5'- gGUGCUGcCGCCcucGCCGCCUCGggccgCCggaUCCg -3'
miRNA:   3'- -UAUGAC-GUGG---CGGCGGAGCa----GGa--AGG- -5'
6406 5' -57.4 NC_001847.1 + 36900 0.74 0.367505
Target:  5'- -cGCUGCcCCGCCGCCacggCGUCgCcUCCu -3'
miRNA:   3'- uaUGACGuGGCGGCGGa---GCAG-GaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.