miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6407 5' -57.9 NC_001847.1 + 5133 0.66 0.78392
Target:  5'- cGCGCUCuuGUAGaagaaGCAGG--GGUGUg -3'
miRNA:   3'- -CGCGGGggCAUCa----CGUCCuuCCACAa -5'
6407 5' -57.9 NC_001847.1 + 92439 0.66 0.78392
Target:  5'- cGCGCCaaauCCGg---GCuGGGAGGUGUc -3'
miRNA:   3'- -CGCGGg---GGCaucaCGuCCUUCCACAa -5'
6407 5' -57.9 NC_001847.1 + 56088 0.66 0.78392
Target:  5'- aGCGCgCCCGgGGUGCGGGGcuGGc--- -3'
miRNA:   3'- -CGCGgGGGCaUCACGUCCUu-CCacaa -5'
6407 5' -57.9 NC_001847.1 + 43589 0.66 0.774595
Target:  5'- cGCGCCCCagCGUGGcGCuGGGGccGGUGc- -3'
miRNA:   3'- -CGCGGGG--GCAUCaCGuCCUU--CCACaa -5'
6407 5' -57.9 NC_001847.1 + 52604 0.66 0.774595
Target:  5'- uGCGCUUCgGUAGUGCGGucGAAGGc--- -3'
miRNA:   3'- -CGCGGGGgCAUCACGUC--CUUCCacaa -5'
6407 5' -57.9 NC_001847.1 + 22234 0.67 0.755568
Target:  5'- gGCGCCCgUGUAGccgaGCAGGAAGa---- -3'
miRNA:   3'- -CGCGGGgGCAUCa---CGUCCUUCcacaa -5'
6407 5' -57.9 NC_001847.1 + 125047 0.67 0.755568
Target:  5'- gGCGCCCgUGUAGccgaGCAGGAAGa---- -3'
miRNA:   3'- -CGCGGGgGCAUCa---CGUCCUUCcacaa -5'
6407 5' -57.9 NC_001847.1 + 42448 0.67 0.726226
Target:  5'- cGCGCgCUCGUGG-GCAG-AGGGUGc- -3'
miRNA:   3'- -CGCGgGGGCAUCaCGUCcUUCCACaa -5'
6407 5' -57.9 NC_001847.1 + 60920 0.67 0.720261
Target:  5'- cGCGUCCCCGUugcagaggucaaaggGGcccguguuuUGCAGGAAGGc--- -3'
miRNA:   3'- -CGCGGGGGCA---------------UC---------ACGUCCUUCCacaa -5'
6407 5' -57.9 NC_001847.1 + 23363 0.68 0.681927
Target:  5'- cCGCCCCCGggcccgagaugagGGUGgGGGcuGGGUGg- -3'
miRNA:   3'- cGCGGGGGCa------------UCACgUCCu-UCCACaa -5'
6407 5' -57.9 NC_001847.1 + 126176 0.68 0.681927
Target:  5'- cCGCCCCCGggcccgagaugagGGUGgGGGcuGGGUGg- -3'
miRNA:   3'- cGCGGGGGCa------------UCACgUCCu-UCCACaa -5'
6407 5' -57.9 NC_001847.1 + 18622 0.68 0.675807
Target:  5'- gGCGCgCgCGUAGcGCAGGcaGAGGUGc- -3'
miRNA:   3'- -CGCGgGgGCAUCaCGUCC--UUCCACaa -5'
6407 5' -57.9 NC_001847.1 + 115294 0.68 0.665579
Target:  5'- gGCGCCCCCG-GGcGCGGGccAAGGg--- -3'
miRNA:   3'- -CGCGGGGGCaUCaCGUCC--UUCCacaa -5'
6407 5' -57.9 NC_001847.1 + 90961 0.68 0.665579
Target:  5'- gGCGCuCCCCGcggucagacaUAGUgGCAG-AGGGUGUg -3'
miRNA:   3'- -CGCG-GGGGC----------AUCA-CGUCcUUCCACAa -5'
6407 5' -57.9 NC_001847.1 + 74835 0.69 0.583465
Target:  5'- gGCGCCCaUCGUGGUGCgcuuuaGGGgcGGcUGUg -3'
miRNA:   3'- -CGCGGG-GGCAUCACG------UCCuuCC-ACAa -5'
6407 5' -57.9 NC_001847.1 + 51838 0.73 0.393844
Target:  5'- aGCGCCCCCGUgcgcgGGUcgauCAGGAggccgcAGGUGUg -3'
miRNA:   3'- -CGCGGGGGCA-----UCAc---GUCCU------UCCACAa -5'
6407 5' -57.9 NC_001847.1 + 85451 1.08 0.001762
Target:  5'- cGCGCCCCCGUAGUGCAGGAAGGUGUUg -3'
miRNA:   3'- -CGCGGGGGCAUCACGUCCUUCCACAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.