miRNA display CGI


Results 1 - 20 of 1275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6409 3' -67.9 NC_001847.1 + 75561 0.66 0.415269
Target:  5'- gCGGACgCGCacGccagccagagcuuccGCCGgCACCGC-CCCCg -3'
miRNA:   3'- -GCCUGgGCG--C---------------CGGCgGUGGCGcGGGG- -5'
6409 3' -67.9 NC_001847.1 + 59594 0.66 0.415269
Target:  5'- aCGGGCagCuCGGCCGCCgagaucgcgcggugcGCCGUGCgCUg -3'
miRNA:   3'- -GCCUGg-GcGCCGGCGG---------------UGGCGCGgGG- -5'
6409 3' -67.9 NC_001847.1 + 94168 0.66 0.412061
Target:  5'- gCGGcuGCUgggCGCGGCCGCC-UCGCGCg-- -3'
miRNA:   3'- -GCC--UGG---GCGCCGGCGGuGGCGCGggg -5'
6409 3' -67.9 NC_001847.1 + 111284 0.66 0.412061
Target:  5'- cCGGGCCgGgGGCggCGCUcggccggggGCgGgGCCCCu -3'
miRNA:   3'- -GCCUGGgCgCCG--GCGG---------UGgCgCGGGG- -5'
6409 3' -67.9 NC_001847.1 + 6095 0.66 0.412061
Target:  5'- gCGGaggcgcgagacGCCCGCGaGgCGCgGCgcgaGCGCCUCg -3'
miRNA:   3'- -GCC-----------UGGGCGC-CgGCGgUGg---CGCGGGG- -5'
6409 3' -67.9 NC_001847.1 + 35626 0.66 0.412061
Target:  5'- --cGCCgGCGGCgcuggggccagCGCUggACCGCGCCgCCu -3'
miRNA:   3'- gccUGGgCGCCG-----------GCGG--UGGCGCGG-GG- -5'
6409 3' -67.9 NC_001847.1 + 64539 0.66 0.412061
Target:  5'- uCGGAgCCGggcCGGCCGugcacacguucaCCAuCCGCuGCCUCg -3'
miRNA:   3'- -GCCUgGGC---GCCGGC------------GGU-GGCG-CGGGG- -5'
6409 3' -67.9 NC_001847.1 + 97472 0.66 0.412061
Target:  5'- aGGGCCgCGCGcuaaGCCcgcggGCUugCGCGCCg- -3'
miRNA:   3'- gCCUGG-GCGC----CGG-----CGGugGCGCGGgg -5'
6409 3' -67.9 NC_001847.1 + 121475 0.66 0.412061
Target:  5'- gCGcGGCUCGUGGUUcCaCACCGCGCCg- -3'
miRNA:   3'- -GC-CUGGGCGCCGGcG-GUGGCGCGGgg -5'
6409 3' -67.9 NC_001847.1 + 52118 0.66 0.412061
Target:  5'- aCGcGGCCCGCGGuaG-UGCUGgGCCUCa -3'
miRNA:   3'- -GC-CUGGGCGCCggCgGUGGCgCGGGG- -5'
6409 3' -67.9 NC_001847.1 + 92639 0.66 0.412061
Target:  5'- aCGGcgcGCCCgGCGGUuuCGCCcgcagcgcuucgGCgCGcCGCCCCa -3'
miRNA:   3'- -GCC---UGGG-CGCCG--GCGG------------UG-GC-GCGGGG- -5'
6409 3' -67.9 NC_001847.1 + 16138 0.66 0.412061
Target:  5'- gCGGGUCUGCGaucagcGCCagcaugucgcacGCCGCCGCGCUCg -3'
miRNA:   3'- -GCCUGGGCGC------CGG------------CGGUGGCGCGGGg -5'
6409 3' -67.9 NC_001847.1 + 43658 0.66 0.412061
Target:  5'- aGGGCUCggGUGGcCCGCCGCagGUGCUCg -3'
miRNA:   3'- gCCUGGG--CGCC-GGCGGUGg-CGCGGGg -5'
6409 3' -67.9 NC_001847.1 + 42473 0.66 0.412061
Target:  5'- aGGugCUggugggGCGGCgCGCCGaaGCGCUgCg -3'
miRNA:   3'- gCCugGG------CGCCG-GCGGUggCGCGGgG- -5'
6409 3' -67.9 NC_001847.1 + 79858 0.66 0.412061
Target:  5'- gGGACaCGaCuGCCGCCcguCCGgGCCCg -3'
miRNA:   3'- gCCUGgGC-GcCGGCGGu--GGCgCGGGg -5'
6409 3' -67.9 NC_001847.1 + 81715 0.66 0.412061
Target:  5'- gCGcGCCgGUGGaaGCgGCaCGCGCCCUc -3'
miRNA:   3'- -GCcUGGgCGCCggCGgUG-GCGCGGGG- -5'
6409 3' -67.9 NC_001847.1 + 100959 0.66 0.412061
Target:  5'- gGGACgUGCGcGCCcccggcCCGCaGCGCCUCa -3'
miRNA:   3'- gCCUGgGCGC-CGGc-----GGUGgCGCGGGG- -5'
6409 3' -67.9 NC_001847.1 + 8471 0.66 0.412061
Target:  5'- cCGGGCCgGgGGCggCGCUcggccggggGCgGgGCCCCu -3'
miRNA:   3'- -GCCUGGgCgCCG--GCGG---------UGgCgCGGGG- -5'
6409 3' -67.9 NC_001847.1 + 133135 0.66 0.412061
Target:  5'- uGGAaaaCCUGCGGCUGaaGCUaGCGCCUUu -3'
miRNA:   3'- gCCU---GGGCGCCGGCggUGG-CGCGGGG- -5'
6409 3' -67.9 NC_001847.1 + 84886 0.66 0.412061
Target:  5'- aCGcGCCCaGCGcguccagcuucGCCGCgucgucUGCCGCGCCCUg -3'
miRNA:   3'- -GCcUGGG-CGC-----------CGGCG------GUGGCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.