miRNA display CGI

Results 1 - 20 of 1275 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6409	3'	-67.9	NC_001847.1	+	92639	0.66	0.412061
	Target:  5'- aCGGcgcGCCCgGCGGUuuCGCCcgcagcgcuucgGCgCGcCGCCCCa -3' miRNA:   3'- -GCC---UGGG-CGCCG--GCGG------------UG-GC-GCGGGG- -5'
6409	3'	-67.9	NC_001847.1	+	110788	0.66	0.411261
	Target:  5'- gCGGACaguacccuaCCGaaaaGGCCGCgCGCggcguggCGCGCCaCCg -3' miRNA:   3'- -GCCUG---------GGCg---CCGGCG-GUG-------GCGCGG-GG- -5'
6409	3'	-67.9	NC_001847.1	+	60816	0.66	0.407277
	Target:  5'- gCGcGCCUGCGGCagcggcacCGUCAugggaaacagcagcuCCGCGCCCg -3' miRNA:   3'- -GCcUGGGCGCCG--------GCGGU---------------GGCGCGGGg -5'
6409	3'	-67.9	NC_001847.1	+	99581	0.66	0.404107
	Target:  5'- cCGGcGCCCucgucGCGGUCGCgCGCCGC-CUCg -3' miRNA:   3'- -GCC-UGGG-----CGCCGGCG-GUGGCGcGGGg -5'
6409	3'	-67.9	NC_001847.1	+	23727	0.66	0.404107
	Target:  5'- --cGCCCcCGGCCGagCGCCGC-CCCUg -3' miRNA:   3'- gccUGGGcGCCGGCg-GUGGCGcGGGG- -5'
6409	3'	-67.9	NC_001847.1	+	123784	0.66	0.404107
	Target:  5'- uCGcGCCgCGCGGCCGCgcgUACgaGUGCuCCCg -3' miRNA:   3'- -GCcUGG-GCGCCGGCG---GUGg-CGCG-GGG- -5'
6409	3'	-67.9	NC_001847.1	+	120471	0.66	0.404107
	Target:  5'- ----gCCGC-GCCGCCgGCCGCGCCg- -3' miRNA:   3'- gccugGGCGcCGGCGG-UGGCGCGGgg -5'
6409	3'	-67.9	NC_001847.1	+	107142	0.66	0.404107
	Target:  5'- gCGGcACgCCGCGcGCUG-CAgCGCGgCCCa -3' miRNA:   3'- -GCC-UG-GGCGC-CGGCgGUgGCGCgGGG- -5'
6409	3'	-67.9	NC_001847.1	+	102836	0.66	0.404107
	Target:  5'- gCGGGucccguUCCGCGGCgGCgucgcgggGCCGCGCCa- -3' miRNA:   3'- -GCCU------GGGCGCCGgCGg-------UGGCGCGGgg -5'
6409	3'	-67.9	NC_001847.1	+	107255	0.66	0.411261
	Target:  5'- cCGGGCCgGCGaccUCGCCAUccaaccgcucgagCGCGgCCCa -3' miRNA:   3'- -GCCUGGgCGCc--GGCGGUG-------------GCGCgGGG- -5'
6409	3'	-67.9	NC_001847.1	+	16138	0.66	0.412061
	Target:  5'- gCGGGUCUGCGaucagcGCCagcaugucgcacGCCGCCGCGCUCg -3' miRNA:   3'- -GCCUGGGCGC------CGG------------CGGUGGCGCGGGg -5'
6409	3'	-67.9	NC_001847.1	+	43658	0.66	0.412061
	Target:  5'- aGGGCUCggGUGGcCCGCCGCagGUGCUCg -3' miRNA:   3'- gCCUGGG--CGCC-GGCGGUGg-CGCGGGg -5'
6409	3'	-67.9	NC_001847.1	+	75561	0.66	0.415269
	Target:  5'- gCGGACgCGCacGccagccagagcuuccGCCGgCACCGC-CCCCg -3' miRNA:   3'- -GCCUGgGCG--C---------------CGGCgGUGGCGcGGGG- -5'
6409	3'	-67.9	NC_001847.1	+	84886	0.66	0.412061
	Target:  5'- aCGcGCCCaGCGcguccagcuucGCCGCgucgucUGCCGCGCCCUg -3' miRNA:   3'- -GCcUGGG-CGC-----------CGGCG------GUGGCGCGGGG- -5'
6409	3'	-67.9	NC_001847.1	+	133135	0.66	0.412061
	Target:  5'- uGGAaaaCCUGCGGCUGaaGCUaGCGCCUUu -3' miRNA:   3'- gCCU---GGGCGCCGGCggUGG-CGCGGGG- -5'
6409	3'	-67.9	NC_001847.1	+	8471	0.66	0.412061
	Target:  5'- cCGGGCCgGgGGCggCGCUcggccggggGCgGgGCCCCu -3' miRNA:   3'- -GCCUGGgCgCCG--GCGG---------UGgCgCGGGG- -5'
6409	3'	-67.9	NC_001847.1	+	100959	0.66	0.412061
	Target:  5'- gGGACgUGCGcGCCcccggcCCGCaGCGCCUCa -3' miRNA:   3'- gCCUGgGCGC-CGGc-----GGUGgCGCGGGG- -5'
6409	3'	-67.9	NC_001847.1	+	81715	0.66	0.412061
	Target:  5'- gCGcGCCgGUGGaaGCgGCaCGCGCCCUc -3' miRNA:   3'- -GCcUGGgCGCCggCGgUG-GCGCGGGG- -5'
6409	3'	-67.9	NC_001847.1	+	79858	0.66	0.412061
	Target:  5'- gGGACaCGaCuGCCGCCcguCCGgGCCCg -3' miRNA:   3'- gCCUGgGC-GcCGGCGGu--GGCgCGGGg -5'
6409	3'	-67.9	NC_001847.1	+	42473	0.66	0.412061
	Target:  5'- aGGugCUggugggGCGGCgCGCCGaaGCGCUgCg -3' miRNA:   3'- gCCugGG------CGCCG-GCGGUggCGCGGgG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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