miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6409 5' -49.7 NC_001847.1 + 66500 0.65 0.997771
Target:  5'- -gGGAGGCgGUGAAGUuugggcuggagcuGCGCggCUGGg -3'
miRNA:   3'- agUUUCUGgCACUUCG-------------UGUGuaGGCC- -5'
6409 5' -49.7 NC_001847.1 + 4281 0.66 0.99739
Target:  5'- ----cGGCCacGAGGCGCGCG-CCGGc -3'
miRNA:   3'- aguuuCUGGcaCUUCGUGUGUaGGCC- -5'
6409 5' -49.7 NC_001847.1 + 27555 0.66 0.99739
Target:  5'- gCGgcGGCUG-GGAGC-CGCAUCCGc -3'
miRNA:   3'- aGUuuCUGGCaCUUCGuGUGUAGGCc -5'
6409 5' -49.7 NC_001847.1 + 74126 0.66 0.99739
Target:  5'- ----cGGCCGUGguGCuGCGCGUggcgCCGGg -3'
miRNA:   3'- aguuuCUGGCACuuCG-UGUGUA----GGCC- -5'
6409 5' -49.7 NC_001847.1 + 83933 0.66 0.99739
Target:  5'- gCAGGGcCCGcucGAAGUGCGCGcggggCCGGg -3'
miRNA:   3'- aGUUUCuGGCa--CUUCGUGUGUa----GGCC- -5'
6409 5' -49.7 NC_001847.1 + 44881 0.66 0.99739
Target:  5'- cUCAAAGGCCGcgUGAacgAGCGCGuCAcagCCGcGg -3'
miRNA:   3'- -AGUUUCUGGC--ACU---UCGUGU-GUa--GGC-C- -5'
6409 5' -49.7 NC_001847.1 + 84434 0.66 0.99739
Target:  5'- gCGucGugUGUGc-GCACGCGUgCCGGu -3'
miRNA:   3'- aGUuuCugGCACuuCGUGUGUA-GGCC- -5'
6409 5' -49.7 NC_001847.1 + 120671 0.66 0.99739
Target:  5'- cUCcGGGACgGcguUGGAGCGCACG-CCGa -3'
miRNA:   3'- -AGuUUCUGgC---ACUUCGUGUGUaGGCc -5'
6409 5' -49.7 NC_001847.1 + 122774 0.66 0.99739
Target:  5'- ---cGGGCCGUGcgcuccAGCAgGC-UCCGGu -3'
miRNA:   3'- aguuUCUGGCACu-----UCGUgUGuAGGCC- -5'
6409 5' -49.7 NC_001847.1 + 86982 0.66 0.99739
Target:  5'- cCGccGGCCG-GGccGGCGCGCG-CCGGc -3'
miRNA:   3'- aGUuuCUGGCaCU--UCGUGUGUaGGCC- -5'
6409 5' -49.7 NC_001847.1 + 13962 0.66 0.997345
Target:  5'- gCAAGuGCCGccccgcaUGucGCGCACGUCCGcGg -3'
miRNA:   3'- aGUUUcUGGC-------ACuuCGUGUGUAGGC-C- -5'
6409 5' -49.7 NC_001847.1 + 63354 0.66 0.996906
Target:  5'- cCAGGGGCgCGUGcGGCACuguguacuCGUCCa- -3'
miRNA:   3'- aGUUUCUG-GCACuUCGUGu-------GUAGGcc -5'
6409 5' -49.7 NC_001847.1 + 75346 0.66 0.996906
Target:  5'- cUCGAccGCCGUGAAcaACAugcuCGUCCGGg -3'
miRNA:   3'- -AGUUucUGGCACUUcgUGU----GUAGGCC- -5'
6409 5' -49.7 NC_001847.1 + 78627 0.66 0.996906
Target:  5'- gCGAgcGGGCCGUGAAGCGgAaguUCCc- -3'
miRNA:   3'- aGUU--UCUGGCACUUCGUgUgu-AGGcc -5'
6409 5' -49.7 NC_001847.1 + 3984 0.66 0.996692
Target:  5'- cCGGGGGCCG---GGCGCGCGgccccgcggggcgCCGGg -3'
miRNA:   3'- aGUUUCUGGCacuUCGUGUGUa------------GGCC- -5'
6409 5' -49.7 NC_001847.1 + 89575 0.66 0.996349
Target:  5'- gCGAGGG-CGUGGAGCGCGacgCCGc -3'
miRNA:   3'- aGUUUCUgGCACUUCGUGUguaGGCc -5'
6409 5' -49.7 NC_001847.1 + 111285 0.66 0.996349
Target:  5'- ---cGGGCCG-GggGCGgCGCucggCCGGg -3'
miRNA:   3'- aguuUCUGGCaCuuCGU-GUGua--GGCC- -5'
6409 5' -49.7 NC_001847.1 + 8472 0.66 0.996349
Target:  5'- ---cGGGCCG-GggGCGgCGCucggCCGGg -3'
miRNA:   3'- aguuUCUGGCaCuuCGU-GUGua--GGCC- -5'
6409 5' -49.7 NC_001847.1 + 8974 0.66 0.996349
Target:  5'- aUCucGGGCCG-GggGCGgGCAgaCGGg -3'
miRNA:   3'- -AGuuUCUGGCaCuuCGUgUGUagGCC- -5'
6409 5' -49.7 NC_001847.1 + 62055 0.66 0.996349
Target:  5'- cUCAAuGGGCCG-GAuGCGCGCGUCg-- -3'
miRNA:   3'- -AGUU-UCUGGCaCUuCGUGUGUAGgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.