miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
641 3' -50.3 AC_000017.1 + 27848 0.66 0.866113
Target:  5'- cGCg---GUGAAGGacuCGGCGGAcGGCu -3'
miRNA:   3'- -CGauuuUACUUCUcu-GCCGCCU-CCGc -5'
641 3' -50.3 AC_000017.1 + 15745 0.66 0.857395
Target:  5'- aCUGAcGGUGGu--GAUGGUGGGGGCu -3'
miRNA:   3'- cGAUU-UUACUucuCUGCCGCCUCCGc -5'
641 3' -50.3 AC_000017.1 + 12661 0.66 0.857395
Target:  5'- gGCUG--GUGggG-GAUGuGCGcGAGGCc -3'
miRNA:   3'- -CGAUuuUACuuCuCUGC-CGC-CUCCGc -5'
641 3' -50.3 AC_000017.1 + 15033 0.66 0.856508
Target:  5'- aGCUugaAAGAUGAcaccgaacagggcGGGGGUGGCGcAGGCGg -3'
miRNA:   3'- -CGA---UUUUACU-------------UCUCUGCCGCcUCCGC- -5'
641 3' -50.3 AC_000017.1 + 13164 0.66 0.84841
Target:  5'- cGCUGGGGcagGAGGAcACGGgcagccUGGAGGCa -3'
miRNA:   3'- -CGAUUUUa--CUUCUcUGCC------GCCUCCGc -5'
641 3' -50.3 AC_000017.1 + 23683 0.67 0.829678
Target:  5'- gGCUG-AAUGAAGAcGACccaguGGCGcGGGGUa -3'
miRNA:   3'- -CGAUuUUACUUCU-CUG-----CCGC-CUCCGc -5'
641 3' -50.3 AC_000017.1 + 6703 0.67 0.810003
Target:  5'- gGCaUGGGGUGGGuGAG-C-GCGGAGGCGu -3'
miRNA:   3'- -CG-AUUUUACUU-CUCuGcCGCCUCCGC- -5'
641 3' -50.3 AC_000017.1 + 14630 0.67 0.799841
Target:  5'- aGCUGAAAUau-GAGugGGUGGAGuucacGCu -3'
miRNA:   3'- -CGAUUUUAcuuCUCugCCGCCUC-----CGc -5'
641 3' -50.3 AC_000017.1 + 23930 0.68 0.778935
Target:  5'- cGCUuuuuUGGgggcgcgcgGGGGGCGGCGGcgacGGCGa -3'
miRNA:   3'- -CGAuuuuACU---------UCUCUGCCGCCu---CCGC- -5'
641 3' -50.3 AC_000017.1 + 16266 0.68 0.757338
Target:  5'- gGCggcAGUGccGGGucgGCGGCGGuGGCGa -3'
miRNA:   3'- -CGauuUUACuuCUC---UGCCGCCuCCGC- -5'
641 3' -50.3 AC_000017.1 + 9815 0.68 0.757338
Target:  5'- -gUAGGcgGucuuGAGACGGCGGAuGGuCGa -3'
miRNA:   3'- cgAUUUuaCuu--CUCUGCCGCCU-CC-GC- -5'
641 3' -50.3 AC_000017.1 + 17593 0.68 0.757338
Target:  5'- gGCUGGc--GAcGGcGACGGCGGcGGCGg -3'
miRNA:   3'- -CGAUUuuaCUuCU-CUGCCGCCuCCGC- -5'
641 3' -50.3 AC_000017.1 + 30483 0.68 0.746315
Target:  5'- aGCUAAucucAGUG-GGAGugGGagaaGGAgGGCGa -3'
miRNA:   3'- -CGAUU----UUACuUCUCugCCg---CCU-CCGC- -5'
641 3' -50.3 AC_000017.1 + 6010 0.68 0.745205
Target:  5'- cCUGAAggGggGguauaaaAGGgGGUGGGGGCGc -3'
miRNA:   3'- cGAUUUuaCuuC-------UCUgCCGCCUCCGC- -5'
641 3' -50.3 AC_000017.1 + 19273 0.71 0.607686
Target:  5'- gGCUGAagaacuugaaGAUGAGGAGGaGGCagaggaggaGGAGGCa -3'
miRNA:   3'- -CGAUU----------UUACUUCUCUgCCG---------CCUCCGc -5'
641 3' -50.3 AC_000017.1 + 24203 0.71 0.605347
Target:  5'- gGCggcaucgGuGGAGGCGGUGGuGGCGa -3'
miRNA:   3'- -CGauuuua-CuUCUCUGCCGCCuCCGC- -5'
641 3' -50.3 AC_000017.1 + 9114 0.72 0.526959
Target:  5'- cGCUGAAA-GAGGuaguuGAgGGUGGuGGCGg -3'
miRNA:   3'- -CGAUUUUaCUUCu----CUgCCGCCuCCGC- -5'
641 3' -50.3 AC_000017.1 + 2178 0.72 0.504576
Target:  5'- aGC-AGGAgGAAGccAGGCGGCGGcGGCGg -3'
miRNA:   3'- -CGaUUUUaCUUC--UCUGCCGCCuCCGC- -5'
641 3' -50.3 AC_000017.1 + 3862 0.8 0.19423
Target:  5'- gGCUGcAGcggcUGAAGcGGCGGCGGAGGCu -3'
miRNA:   3'- -CGAUuUU----ACUUCuCUGCCGCCUCCGc -5'
641 3' -50.3 AC_000017.1 + 16165 1.11 0.001495
Target:  5'- uGCUAAAAUGAAGAGACGGCGGAGGCGc -3'
miRNA:   3'- -CGAUUUUACUUCUCUGCCGCCUCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.