miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
641 5' -64.7 AC_000017.1 + 12146 0.66 0.213328
Target:  5'- aUCGCCGCUGCCcgugccaGCCagGGCCCuuugcaGGCugUg -3'
miRNA:   3'- cAGCGGUGGCGG-------CGG--CUGGG------CCGugA- -5'
641 5' -64.7 AC_000017.1 + 16094 0.66 0.213328
Target:  5'- -aCGCCcacGCCGCCGCCaguguccaccgugGACgCGGC-Ca -3'
miRNA:   3'- caGCGG---UGGCGGCGG-------------CUGgGCCGuGa -5'
641 5' -64.7 AC_000017.1 + 33290 0.66 0.208451
Target:  5'- -cUGCUGCCGCCGCCGcUCCGuccuGCAg- -3'
miRNA:   3'- caGCGGUGGCGGCGGCuGGGC----CGUga -5'
641 5' -64.7 AC_000017.1 + 17857 0.66 0.203145
Target:  5'- aUCGCCGCgGCgauuggCGCCGuGCCCGGaauuGCa -3'
miRNA:   3'- cAGCGGUGgCG------GCGGC-UGGGCCg---UGa -5'
641 5' -64.7 AC_000017.1 + 8660 0.66 0.187926
Target:  5'- cGUCGgCGCCGCgCGCgGGCaggagCUGGUGCUg -3'
miRNA:   3'- -CAGCgGUGGCG-GCGgCUG-----GGCCGUGA- -5'
641 5' -64.7 AC_000017.1 + 18795 0.67 0.183081
Target:  5'- uGUCGCCGCCagaggaGCUGCUGAgUCGccGCGCg -3'
miRNA:   3'- -CAGCGGUGG------CGGCGGCUgGGC--CGUGa -5'
641 5' -64.7 AC_000017.1 + 16282 0.67 0.172353
Target:  5'- -cCGCCGCCGCgcguugggcggcagUGCCGGgUCGGCGg- -3'
miRNA:   3'- caGCGGUGGCG--------------GCGGCUgGGCCGUga -5'
641 5' -64.7 AC_000017.1 + 8989 0.67 0.169202
Target:  5'- cUCGCCGCCaCCGUggagCGAgCCGGaCGCg -3'
miRNA:   3'- cAGCGGUGGcGGCG----GCUgGGCC-GUGa -5'
641 5' -64.7 AC_000017.1 + 10404 0.67 0.164788
Target:  5'- -cCGCCAgCCGCCGCCGcACUuuuUGGUAg- -3'
miRNA:   3'- caGCGGU-GGCGGCGGC-UGG---GCCGUga -5'
641 5' -64.7 AC_000017.1 + 16392 0.67 0.164788
Target:  5'- --gGCCGCuCGUCGCCugGACCUggggGGCACa -3'
miRNA:   3'- cagCGGUG-GCGGCGG--CUGGG----CCGUGa -5'
641 5' -64.7 AC_000017.1 + 18696 0.67 0.160479
Target:  5'- aUCGCgGaCCGCUGgCGGCaCGGCGCa -3'
miRNA:   3'- cAGCGgU-GGCGGCgGCUGgGCCGUGa -5'
641 5' -64.7 AC_000017.1 + 10516 0.68 0.151759
Target:  5'- -cCaCCACCGCCGCCGGCaucaccuggauguCCaGGUACa -3'
miRNA:   3'- caGcGGUGGCGGCGGCUG-------------GG-CCGUGa -5'
641 5' -64.7 AC_000017.1 + 12249 0.68 0.136332
Target:  5'- -gUGCCACCGCCagcccagguCCGGCCCcagcugccuccagGGCGCg -3'
miRNA:   3'- caGCGGUGGCGGc--------GGCUGGG-------------CCGUGa -5'
641 5' -64.7 AC_000017.1 + 17844 0.69 0.12952
Target:  5'- -aCGCgCGCCGCCGCCGG--UGGUGCg -3'
miRNA:   3'- caGCG-GUGGCGGCGGCUggGCCGUGa -5'
641 5' -64.7 AC_000017.1 + 14268 0.69 0.12952
Target:  5'- -gCGCCGCCGCCaCUGGCgCC-GCGCUc -3'
miRNA:   3'- caGCGGUGGCGGcGGCUG-GGcCGUGA- -5'
641 5' -64.7 AC_000017.1 + 11193 0.69 0.12269
Target:  5'- -aCGaaCCcCCGCggCGCCgGGCCCGGCACUa -3'
miRNA:   3'- caGC--GGuGGCG--GCGG-CUGGGCCGUGA- -5'
641 5' -64.7 AC_000017.1 + 10153 0.7 0.110024
Target:  5'- --aGCgCGuuGUCGCCGACCUGGCcCUg -3'
miRNA:   3'- cagCG-GUggCGGCGGCUGGGCCGuGA- -5'
641 5' -64.7 AC_000017.1 + 17535 0.72 0.072674
Target:  5'- -cCGCCGCCGUCGCCGucgccaGCCCGuGCu-- -3'
miRNA:   3'- caGCGGUGGCGGCGGC------UGGGC-CGuga -5'
641 5' -64.7 AC_000017.1 + 9805 0.72 0.068724
Target:  5'- -cCGCCGcCCGCUGCCGcccGCCaCGGUGCUc -3'
miRNA:   3'- caGCGGU-GGCGGCGGC---UGG-GCCGUGA- -5'
641 5' -64.7 AC_000017.1 + 26810 0.72 0.066827
Target:  5'- uGUUGCUGCCGCUGCCG--CCGGUGCa -3'
miRNA:   3'- -CAGCGGUGGCGGCGGCugGGCCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.