miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6410 3' -56.4 NC_001847.1 + 58677 0.66 0.895147
Target:  5'- cCGcugCCGUGgaagcgCGUcUGUGCCgCGGCGGAa -3'
miRNA:   3'- -GCa--GGUACa-----GCA-ACGCGG-GCCGCUUc -5'
6410 3' -56.4 NC_001847.1 + 39740 0.66 0.895147
Target:  5'- gGUCgucGUCGUUGUcCCCGGCGccGg -3'
miRNA:   3'- gCAGguaCAGCAACGcGGGCCGCuuC- -5'
6410 3' -56.4 NC_001847.1 + 97878 0.66 0.895147
Target:  5'- gCGUCCcaGUCGgcgGCGCggaUGGCGAAc -3'
miRNA:   3'- -GCAGGuaCAGCaa-CGCGg--GCCGCUUc -5'
6410 3' -56.4 NC_001847.1 + 99234 0.66 0.895147
Target:  5'- cCGgugCCAUGccgcUCGUUGuCGCagCCGGCGcGGg -3'
miRNA:   3'- -GCa--GGUAC----AGCAAC-GCG--GGCCGCuUC- -5'
6410 3' -56.4 NC_001847.1 + 17427 0.66 0.891169
Target:  5'- uGcCCAUGUCGcgGCGCCaaguguacacgcccuCGGUGgcGg -3'
miRNA:   3'- gCaGGUACAGCaaCGCGG---------------GCCGCuuC- -5'
6410 3' -56.4 NC_001847.1 + 115669 0.66 0.881572
Target:  5'- gCGUCCGUG-CGggugaGCGgCUGcGCGggGg -3'
miRNA:   3'- -GCAGGUACaGCaa---CGCgGGC-CGCuuC- -5'
6410 3' -56.4 NC_001847.1 + 54379 0.66 0.881572
Target:  5'- uCGUCCcgGUCc--GCGCCgGcGCGGAc -3'
miRNA:   3'- -GCAGGuaCAGcaaCGCGGgC-CGCUUc -5'
6410 3' -56.4 NC_001847.1 + 82600 0.66 0.874452
Target:  5'- ---gCAUGUCGgccGCGCCCuccGGCGAc- -3'
miRNA:   3'- gcagGUACAGCaa-CGCGGG---CCGCUuc -5'
6410 3' -56.4 NC_001847.1 + 87339 0.66 0.874452
Target:  5'- cCGUCCccgGUGUCGgccgaGgGCCUGGCcGAGc -3'
miRNA:   3'- -GCAGG---UACAGCaa---CgCGGGCCGcUUC- -5'
6410 3' -56.4 NC_001847.1 + 94200 0.66 0.874452
Target:  5'- aGUUCGaGgCGcUGCGCgCGGCGGAGc -3'
miRNA:   3'- gCAGGUaCaGCaACGCGgGCCGCUUC- -5'
6410 3' -56.4 NC_001847.1 + 104869 0.66 0.874452
Target:  5'- gCGcUUGUGUCGUcUGCGCCgCGGCGc-- -3'
miRNA:   3'- -GCaGGUACAGCA-ACGCGG-GCCGCuuc -5'
6410 3' -56.4 NC_001847.1 + 103962 0.66 0.867116
Target:  5'- cCGUCgAUGgCGUcgGCGCCCaGCGcGGc -3'
miRNA:   3'- -GCAGgUACaGCAa-CGCGGGcCGCuUC- -5'
6410 3' -56.4 NC_001847.1 + 126365 0.66 0.867116
Target:  5'- ---aCAUGaaggCGgccGCGCCCGGCGGAu -3'
miRNA:   3'- gcagGUACa---GCaa-CGCGGGCCGCUUc -5'
6410 3' -56.4 NC_001847.1 + 8448 0.66 0.867116
Target:  5'- gCGgcgCCggGUCGgaggcgGCGCCgGGcCGggGg -3'
miRNA:   3'- -GCa--GGuaCAGCaa----CGCGGgCC-GCuuC- -5'
6410 3' -56.4 NC_001847.1 + 111261 0.66 0.867116
Target:  5'- gCGgcgCCggGUCGgaggcgGCGCCgGGcCGggGg -3'
miRNA:   3'- -GCa--GGuaCAGCaa----CGCGGgCC-GCuuC- -5'
6410 3' -56.4 NC_001847.1 + 73697 0.67 0.859569
Target:  5'- gCGaCCGccUCGccGCGCCCGGCGGc- -3'
miRNA:   3'- -GCaGGUacAGCaaCGCGGGCCGCUuc -5'
6410 3' -56.4 NC_001847.1 + 128578 0.67 0.851819
Target:  5'- -cUCCAaGUU--UGgGCCCGGCGAAa -3'
miRNA:   3'- gcAGGUaCAGcaACgCGGGCCGCUUc -5'
6410 3' -56.4 NC_001847.1 + 31475 0.67 0.851819
Target:  5'- gCGUCgGUGUCuUU-CGCgCCGGCGAc- -3'
miRNA:   3'- -GCAGgUACAGcAAcGCG-GGCCGCUuc -5'
6410 3' -56.4 NC_001847.1 + 46166 0.67 0.850245
Target:  5'- aGUCCGUGUCGccguaaaccacGCGCacgcgguagcggCCGGCGgcGg -3'
miRNA:   3'- gCAGGUACAGCaa---------CGCG------------GGCCGCuuC- -5'
6410 3' -56.4 NC_001847.1 + 30161 0.67 0.84387
Target:  5'- gCGcCCuggGUgCGUgGCGCUCGGCGGAc -3'
miRNA:   3'- -GCaGGua-CA-GCAaCGCGGGCCGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.