miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6410 5' -54.6 NC_001847.1 + 47879 0.66 0.924796
Target:  5'- gCGCAGCGCgcgcgcgcccgcgcgCCGGGgc--GCAGCcgGu -3'
miRNA:   3'- -GCGUCGCGa--------------GGUCCaucuUGUCGuaC- -5'
6410 5' -54.6 NC_001847.1 + 102216 0.66 0.924237
Target:  5'- cCGC-GCGCgggucgUCGGGcGGGACGGCGUc -3'
miRNA:   3'- -GCGuCGCGa-----GGUCCaUCUUGUCGUAc -5'
6410 5' -54.6 NC_001847.1 + 102526 0.66 0.924237
Target:  5'- gCGCcGCGCcggugaucgcgUCCAGGcAGAuGCAGCAc- -3'
miRNA:   3'- -GCGuCGCG-----------AGGUCCaUCU-UGUCGUac -5'
6410 5' -54.6 NC_001847.1 + 99462 0.66 0.924237
Target:  5'- gCGCAGCGCgccgCuCGGGgccaAGAuCAGCGc- -3'
miRNA:   3'- -GCGUCGCGa---G-GUCCa---UCUuGUCGUac -5'
6410 5' -54.6 NC_001847.1 + 41287 0.66 0.924237
Target:  5'- aGCAGCGCgCCGGcGUAGuGC-GCGa- -3'
miRNA:   3'- gCGUCGCGaGGUC-CAUCuUGuCGUac -5'
6410 5' -54.6 NC_001847.1 + 80992 0.66 0.924237
Target:  5'- aCGCGgaggacGCGCUgcuggaCCAGGaGGAGC-GCAUGg -3'
miRNA:   3'- -GCGU------CGCGA------GGUCCaUCUUGuCGUAC- -5'
6410 5' -54.6 NC_001847.1 + 93750 0.66 0.924237
Target:  5'- cCGC-GCGgUCCGGGagcggcuGAGCgAGCGUGa -3'
miRNA:   3'- -GCGuCGCgAGGUCCau-----CUUG-UCGUAC- -5'
6410 5' -54.6 NC_001847.1 + 84712 0.66 0.924237
Target:  5'- uCGCAGCGCggguucCCGGcagcGUAGGggGCGGCGa- -3'
miRNA:   3'- -GCGUCGCGa-----GGUC----CAUCU--UGUCGUac -5'
6410 5' -54.6 NC_001847.1 + 106959 0.66 0.924237
Target:  5'- gCGCAgGCGCgcggccgCCAGGUAacccAACGGCGc- -3'
miRNA:   3'- -GCGU-CGCGa------GGUCCAUc---UUGUCGUac -5'
6410 5' -54.6 NC_001847.1 + 85883 0.66 0.923676
Target:  5'- aGCAGCGCgagcuugucgaggUCCAGGc-GAGCcGCGUc -3'
miRNA:   3'- gCGUCGCG-------------AGGUCCauCUUGuCGUAc -5'
6410 5' -54.6 NC_001847.1 + 44301 0.66 0.918514
Target:  5'- gCGCGGCGCggcgggCCAGcGccAGAGCGGUg-- -3'
miRNA:   3'- -GCGUCGCGa-----GGUC-Ca-UCUUGUCGuac -5'
6410 5' -54.6 NC_001847.1 + 72707 0.66 0.918514
Target:  5'- aGCGGcCGC-CC-GGUGGGcgGCAGCAg- -3'
miRNA:   3'- gCGUC-GCGaGGuCCAUCU--UGUCGUac -5'
6410 5' -54.6 NC_001847.1 + 102698 0.66 0.918514
Target:  5'- gGCAGgGCgCCGGGc-GGGCGGCGa- -3'
miRNA:   3'- gCGUCgCGaGGUCCauCUUGUCGUac -5'
6410 5' -54.6 NC_001847.1 + 34125 0.66 0.918514
Target:  5'- uGCGGCGCcugCCGcGGUGGccgccGCGGCGa- -3'
miRNA:   3'- gCGUCGCGa--GGU-CCAUCu----UGUCGUac -5'
6410 5' -54.6 NC_001847.1 + 120012 0.66 0.918514
Target:  5'- aGC-GCGCUgcCCGGGU-GAGCGGCc-- -3'
miRNA:   3'- gCGuCGCGA--GGUCCAuCUUGUCGuac -5'
6410 5' -54.6 NC_001847.1 + 19261 0.66 0.912538
Target:  5'- aGCGGCGCgagCC-GGcGGcGCAGCGUc -3'
miRNA:   3'- gCGUCGCGa--GGuCCaUCuUGUCGUAc -5'
6410 5' -54.6 NC_001847.1 + 6824 0.66 0.912538
Target:  5'- uGCAGCGCaaaggugacgUCCucggcgAGGUGcucGAGCAGCAc- -3'
miRNA:   3'- gCGUCGCG----------AGG------UCCAU---CUUGUCGUac -5'
6410 5' -54.6 NC_001847.1 + 122031 0.66 0.912538
Target:  5'- uCGCGGcCGCagCCgAGGaGGAcgGCGGCGUGu -3'
miRNA:   3'- -GCGUC-GCGa-GG-UCCaUCU--UGUCGUAC- -5'
6410 5' -54.6 NC_001847.1 + 63314 0.66 0.912538
Target:  5'- aGCAGCGCgu--GGUucAGcGCGGCGUGc -3'
miRNA:   3'- gCGUCGCGagguCCA--UCuUGUCGUAC- -5'
6410 5' -54.6 NC_001847.1 + 90850 0.66 0.912538
Target:  5'- aGCGGCGCcCCGGGgccGGGGCuggugucgaGGCcgGg -3'
miRNA:   3'- gCGUCGCGaGGUCCa--UCUUG---------UCGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.