miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6411 3' -54.7 NC_001847.1 + 85930 0.66 0.923819
Target:  5'- -cACGAagccCGCGgg---CCCCGGCGCGa -3'
miRNA:   3'- caUGCU----GCGCaucaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 3833 0.66 0.923264
Target:  5'- -aGCGugGCGUuGUUcgcgccgCCCCAG-ACGUa -3'
miRNA:   3'- caUGCugCGCAuCAA-------GGGGUCgUGCA- -5'
6411 3' -54.7 NC_001847.1 + 46541 0.66 0.918152
Target:  5'- -gGCGGCGCGcgcgAGgUCCuCCAGCcgcGCGg -3'
miRNA:   3'- caUGCUGCGCa---UCaAGG-GGUCG---UGCa -5'
6411 3' -54.7 NC_001847.1 + 41828 0.66 0.918152
Target:  5'- -gGCGGCGCGgg--UCCCagggcuggGGCACGUc -3'
miRNA:   3'- caUGCUGCGCaucaAGGGg-------UCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 90195 0.66 0.912842
Target:  5'- cUGCGGCGCGccgucgcccagcccgAGcgCCCCAGCgacACGg -3'
miRNA:   3'- cAUGCUGCGCa--------------UCaaGGGGUCG---UGCa -5'
6411 3' -54.7 NC_001847.1 + 81821 0.66 0.91224
Target:  5'- cUGCGGCGUGg---UCCaggcgagguCCAGCGCGUa -3'
miRNA:   3'- cAUGCUGCGCaucaAGG---------GGUCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 119891 0.67 0.906083
Target:  5'- -gGCGAuCGCGUGcGUggccgccgccgCCgCCGGCGCGUa -3'
miRNA:   3'- caUGCU-GCGCAU-CAa----------GG-GGUCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 79083 0.67 0.906083
Target:  5'- cGUGCGACGUGUG---CCCguGCGCc- -3'
miRNA:   3'- -CAUGCUGCGCAUcaaGGGguCGUGca -5'
6411 3' -54.7 NC_001847.1 + 105708 0.67 0.906083
Target:  5'- -gGCGGCGCcacg--CCCCAGCGCu- -3'
miRNA:   3'- caUGCUGCGcaucaaGGGGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 106664 0.67 0.899683
Target:  5'- -gGCGcCGCGgcG-UCCgCGGCGCGUc -3'
miRNA:   3'- caUGCuGCGCauCaAGGgGUCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 47457 0.67 0.899683
Target:  5'- -cGCGGCGcCGcAGcagCCCCAGCGCc- -3'
miRNA:   3'- caUGCUGC-GCaUCaa-GGGGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 66567 0.67 0.899683
Target:  5'- cGUGCGcgcggaacucgcGCGCGcGGUUCCCCucgccccuucuGGCGCa- -3'
miRNA:   3'- -CAUGC------------UGCGCaUCAAGGGG-----------UCGUGca -5'
6411 3' -54.7 NC_001847.1 + 98792 0.67 0.899683
Target:  5'- -gGCGcCGCGUGGcgcgCCgCGGCGCGc -3'
miRNA:   3'- caUGCuGCGCAUCaa--GGgGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 17297 0.67 0.893044
Target:  5'- -cGCGGCGgGUAGUaCUCggCGGCGCGg -3'
miRNA:   3'- caUGCUGCgCAUCAaGGG--GUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 66673 0.67 0.893044
Target:  5'- uUGCGcccGCGCGgcGgggCCCCGGcCGCGg -3'
miRNA:   3'- cAUGC---UGCGCauCaa-GGGGUC-GUGCa -5'
6411 3' -54.7 NC_001847.1 + 53425 0.67 0.893044
Target:  5'- -gAgGGCGCGUGccgcUUCCaCCGGCGCGc -3'
miRNA:   3'- caUgCUGCGCAUc---AAGG-GGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 95766 0.67 0.893044
Target:  5'- -gGCGGCGCGggccgCUCUGGCGCGg -3'
miRNA:   3'- caUGCUGCGCaucaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 95685 0.67 0.893044
Target:  5'- -gGCGGCGCGggccgCUCUGGCGCGg -3'
miRNA:   3'- caUGCUGCGCaucaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 95658 0.67 0.893044
Target:  5'- -gGCGGCGCGggccgCUCUGGCGCGg -3'
miRNA:   3'- caUGCUGCGCaucaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 95712 0.67 0.893044
Target:  5'- -gGCGGCGCGggccgCUCUGGCGCGg -3'
miRNA:   3'- caUGCUGCGCaucaaGGGGUCGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.