miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6411 5' -52.7 NC_001847.1 + 14457 0.66 0.96898
Target:  5'- cGgcCGCGCUGcucggCGUGcgcuccaacgccGUCCCGGAGGc -3'
miRNA:   3'- -CauGCGCGACaa---GUAC------------CAGGGCUUCU- -5'
6411 5' -52.7 NC_001847.1 + 35672 0.66 0.965775
Target:  5'- --uCGCGCUGaUCuUGGcCCCGAGc- -3'
miRNA:   3'- cauGCGCGACaAGuACCaGGGCUUcu -5'
6411 5' -52.7 NC_001847.1 + 128357 0.66 0.958682
Target:  5'- -cACGCGCUGcUgGUGG-CCaCGGAGc -3'
miRNA:   3'- caUGCGCGACaAgUACCaGG-GCUUCu -5'
6411 5' -52.7 NC_001847.1 + 89041 0.66 0.958682
Target:  5'- uGUGCGCGCUGggcgacggCAUGGcgCgCCGGGu- -3'
miRNA:   3'- -CAUGCGCGACaa------GUACCa-G-GGCUUcu -5'
6411 5' -52.7 NC_001847.1 + 70304 0.66 0.958682
Target:  5'- -gGCGCGCcGcgC-UGGUCUCGGAGc -3'
miRNA:   3'- caUGCGCGaCaaGuACCAGGGCUUCu -5'
6411 5' -52.7 NC_001847.1 + 37729 0.66 0.958682
Target:  5'- -gGCGCGCcgGUugUCGUGG-CCaUGGAGAa -3'
miRNA:   3'- caUGCGCGa-CA--AGUACCaGG-GCUUCU- -5'
6411 5' -52.7 NC_001847.1 + 79259 0.67 0.954782
Target:  5'- cGUACGUGCUGcccgcccaggUCGUGGUCaCGAu-- -3'
miRNA:   3'- -CAUGCGCGACa---------AGUACCAGgGCUucu -5'
6411 5' -52.7 NC_001847.1 + 93683 0.67 0.946702
Target:  5'- -cGCGCGUgcagcucucguuccgGUUCAUGGgcCCCGgcGAc -3'
miRNA:   3'- caUGCGCGa--------------CAAGUACCa-GGGCuuCU- -5'
6411 5' -52.7 NC_001847.1 + 94802 0.67 0.946252
Target:  5'- -cACGCGCac-UCAaGGUCgCCGAGGGc -3'
miRNA:   3'- caUGCGCGacaAGUaCCAG-GGCUUCU- -5'
6411 5' -52.7 NC_001847.1 + 116733 0.67 0.936726
Target:  5'- -cGCGCGCUGUUCGacagccccgcgGG-CCCGcAGGc -3'
miRNA:   3'- caUGCGCGACAAGUa----------CCaGGGCuUCU- -5'
6411 5' -52.7 NC_001847.1 + 31122 0.68 0.926187
Target:  5'- -cGCGCGCUGgagC-UGGcgCCCGAcGAg -3'
miRNA:   3'- caUGCGCGACaa-GuACCa-GGGCUuCU- -5'
6411 5' -52.7 NC_001847.1 + 133935 0.68 0.926187
Target:  5'- -cGCGCGCUGgagC-UGGcgCCCGAcGAg -3'
miRNA:   3'- caUGCGCGACaa-GuACCa-GGGCUuCU- -5'
6411 5' -52.7 NC_001847.1 + 30660 0.69 0.902062
Target:  5'- gGUGCugGCGCUGUUgGaGGgcuaCCCGGAGGu -3'
miRNA:   3'- -CAUG--CGCGACAAgUaCCa---GGGCUUCU- -5'
6411 5' -52.7 NC_001847.1 + 29495 0.69 0.881358
Target:  5'- -cGCGCGCUGUUCAg---CCCGccGGc -3'
miRNA:   3'- caUGCGCGACAAGUaccaGGGCuuCU- -5'
6411 5' -52.7 NC_001847.1 + 132308 0.69 0.881358
Target:  5'- -cGCGCGCUGUUCAg---CCCGccGGc -3'
miRNA:   3'- caUGCGCGACAAGUaccaGGGCuuCU- -5'
6411 5' -52.7 NC_001847.1 + 66883 0.69 0.873979
Target:  5'- -cGCGCGCggGUacUCGUcGGUCCCGGu-- -3'
miRNA:   3'- caUGCGCGa-CA--AGUA-CCAGGGCUucu -5'
6411 5' -52.7 NC_001847.1 + 61754 0.7 0.866369
Target:  5'- -aACGUGCgauacCA-GGUCCCGAAGAc -3'
miRNA:   3'- caUGCGCGacaa-GUaCCAGGGCUUCU- -5'
6411 5' -52.7 NC_001847.1 + 6922 0.7 0.858534
Target:  5'- cUGCGCGCUGUUgAaGGUgCacaCGAAGAc -3'
miRNA:   3'- cAUGCGCGACAAgUaCCA-Gg--GCUUCU- -5'
6411 5' -52.7 NC_001847.1 + 57268 0.7 0.842219
Target:  5'- -aGCGCGCUGUUCAaaaacUCCCGGgccgAGAg -3'
miRNA:   3'- caUGCGCGACAAGUacc--AGGGCU----UCU- -5'
6411 5' -52.7 NC_001847.1 + 84347 1.09 0.005415
Target:  5'- uGUACGCGCUGUUCAUGGUCCCGAAGAc -3'
miRNA:   3'- -CAUGCGCGACAAGUACCAGGGCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.