miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 3399 0.66 0.826558
Target:  5'- gCUUcUGGUCGCAGUcGuaGCGGCggcucaugGCCAc -3'
miRNA:   3'- -GAAcACCAGCGUCA-CcgCGUCG--------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 106212 0.66 0.826558
Target:  5'- gCUUcUGGUCGCAGUcGuaGCGGCggcucaugGCCAc -3'
miRNA:   3'- -GAAcACCAGCGUCA-CcgCGUCG--------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 128368 0.66 0.81793
Target:  5'- --gGUGGccacggaGCAGcUGGCGCcucGCACCGg -3'
miRNA:   3'- gaaCACCag-----CGUC-ACCGCGu--CGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 126926 0.66 0.81793
Target:  5'- --cGUGG-CGCAGcugcuucugcUGGCaCGGCGCCu -3'
miRNA:   3'- gaaCACCaGCGUC----------ACCGcGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 72388 0.66 0.81793
Target:  5'- --gGUGGUgGUGGUGGaCGCGGgCcCCGa -3'
miRNA:   3'- gaaCACCAgCGUCACC-GCGUC-GuGGU- -5'
6412 3' -57.3 NC_001847.1 + 30429 0.66 0.80913
Target:  5'- --cGUGGcgggCGCGGaGGCGCcggGGCugCAc -3'
miRNA:   3'- gaaCACCa---GCGUCaCCGCG---UCGugGU- -5'
6412 3' -57.3 NC_001847.1 + 33204 0.66 0.80913
Target:  5'- aCUUGgcGG-CGCGGguggcucggcuUGGCGCcGCGCCGg -3'
miRNA:   3'- -GAACa-CCaGCGUC-----------ACCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 16834 0.66 0.80913
Target:  5'- --gGUGG-CGCGGgcaucGGgGCGGCGCUc -3'
miRNA:   3'- gaaCACCaGCGUCa----CCgCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 108360 0.66 0.80913
Target:  5'- -cUGcGGcgCGCAGgagGGCGCGcGCACUg -3'
miRNA:   3'- gaACaCCa-GCGUCa--CCGCGU-CGUGGu -5'
6412 3' -57.3 NC_001847.1 + 95339 0.66 0.80913
Target:  5'- ----aGG-CGCAGggGGCGCAGCcaggggagcgggGCCAg -3'
miRNA:   3'- gaacaCCaGCGUCa-CCGCGUCG------------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 73002 0.66 0.80913
Target:  5'- ---cUGGcCGCAGcgcgGGCGCGGaACCAg -3'
miRNA:   3'- gaacACCaGCGUCa---CCGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 90321 0.66 0.80913
Target:  5'- --gGUGGggcCGCcgGGgccgggGGCGCAGcCGCCAa -3'
miRNA:   3'- gaaCACCa--GCG--UCa-----CCGCGUC-GUGGU- -5'
6412 3' -57.3 NC_001847.1 + 14087 0.66 0.800165
Target:  5'- --cGUGGacaUCGCGGaGGCGCuGGCggACCAc -3'
miRNA:   3'- gaaCACC---AGCGUCaCCGCG-UCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 33898 0.66 0.800165
Target:  5'- --cGUGGcCGCGG-GcGUGCAGgACCGc -3'
miRNA:   3'- gaaCACCaGCGUCaC-CGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 16807 0.66 0.800165
Target:  5'- ----cGGUCGCGGagaacucgGGCaGCGGUGCCGg -3'
miRNA:   3'- gaacaCCAGCGUCa-------CCG-CGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 12940 0.66 0.800165
Target:  5'- -gUGUcGUCGUgcGGUGGgGCGGCggGCCGg -3'
miRNA:   3'- gaACAcCAGCG--UCACCgCGUCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 48629 0.66 0.791046
Target:  5'- -aUGUGaacGcCGCGGcGGCGgGGCGCCGc -3'
miRNA:   3'- gaACAC---CaGCGUCaCCGCgUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 59553 0.66 0.791046
Target:  5'- --gGUGGggGCGGcgGGgGCGGUGCCGg -3'
miRNA:   3'- gaaCACCagCGUCa-CCgCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 81975 0.66 0.791046
Target:  5'- ----gGGUCGCAGcGcccgaGCAGCGCCAg -3'
miRNA:   3'- gaacaCCAGCGUCaCcg---CGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 92279 0.67 0.781781
Target:  5'- --cGUGG-CGCGGU-GCGCGGCuaggaaguGCCGg -3'
miRNA:   3'- gaaCACCaGCGUCAcCGCGUCG--------UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.