miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 74358 0.67 0.743442
Target:  5'- --gGUGGcgcgCGUGGUGGCGC-GCGCg- -3'
miRNA:   3'- gaaCACCa---GCGUCACCGCGuCGUGgu -5'
6412 3' -57.3 NC_001847.1 + 49950 0.67 0.7532
Target:  5'- --cGUGGcgCGCGGUGcCGC-GCACCu -3'
miRNA:   3'- gaaCACCa-GCGUCACcGCGuCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 5811 0.67 0.7532
Target:  5'- gCUUGcgcuUGGcgCGCcgGGUGcGUGCAGCACCc -3'
miRNA:   3'- -GAAC----ACCa-GCG--UCAC-CGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 105569 0.67 0.743442
Target:  5'- ----cGG-CGCGGcGGCGCcGGCGCCGg -3'
miRNA:   3'- gaacaCCaGCGUCaCCGCG-UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 25525 0.67 0.733586
Target:  5'- ----aGG-CGCGGuUGGCGC-GCACCGg -3'
miRNA:   3'- gaacaCCaGCGUC-ACCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 75784 0.67 0.781781
Target:  5'- ----cGGcCGCGGgcucGGCGCGGCGCgCGa -3'
miRNA:   3'- gaacaCCaGCGUCa---CCGCGUCGUG-GU- -5'
6412 3' -57.3 NC_001847.1 + 103010 0.67 0.781781
Target:  5'- ----cGGgCGCGGcGGCGCccAGCGCCGg -3'
miRNA:   3'- gaacaCCaGCGUCaCCGCG--UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 85509 0.67 0.766675
Target:  5'- -cUGUGGUCGgcgucUccaaaaacagcgccgGGUGGCGC-GCGCCGa -3'
miRNA:   3'- gaACACCAGC-----G---------------UCACCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 92279 0.67 0.781781
Target:  5'- --cGUGG-CGCGGU-GCGCGGCuaggaaguGCCGg -3'
miRNA:   3'- gaaCACCaGCGUCAcCGCGUCG--------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 101911 0.67 0.772378
Target:  5'- ----aGGcgcCGCGGcgcccGGCGCGGCGCCAa -3'
miRNA:   3'- gaacaCCa--GCGUCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 80855 0.67 0.733586
Target:  5'- --gGUGGUCGUAGcacGCGCggaugAGCGCCu -3'
miRNA:   3'- gaaCACCAGCGUCac-CGCG-----UCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 47052 0.67 0.762848
Target:  5'- --gGUGcguGUCGCGGccGGCGCGGUcgauGCCAg -3'
miRNA:   3'- gaaCAC---CAGCGUCa-CCGCGUCG----UGGU- -5'
6412 3' -57.3 NC_001847.1 + 2756 0.67 0.743442
Target:  5'- ----cGG-CGCGGcGGCGCcGGCGCCGg -3'
miRNA:   3'- gaacaCCaGCGUCaCCGCG-UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 40888 0.67 0.733586
Target:  5'- --cGUGGaCGCAG-GGCGCgAGCcgcuCCAc -3'
miRNA:   3'- gaaCACCaGCGUCaCCGCG-UCGu---GGU- -5'
6412 3' -57.3 NC_001847.1 + 113506 0.68 0.723639
Target:  5'- ----cGGUCGCGcccgGGCGCGGC-CCGc -3'
miRNA:   3'- gaacaCCAGCGUca--CCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 10693 0.68 0.723639
Target:  5'- ----cGGUCGCGcccgGGCGCGGC-CCGc -3'
miRNA:   3'- gaacaCCAGCGUca--CCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 17319 0.68 0.713613
Target:  5'- ----cGGUcCGCucuuGUGGUGCAGgGCCAc -3'
miRNA:   3'- gaacaCCA-GCGu---CACCGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 78862 0.68 0.713613
Target:  5'- -gUGUGcUCGCGGUGcgcgcccucGCGCAGC-CCGu -3'
miRNA:   3'- gaACACcAGCGUCAC---------CGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 76437 0.68 0.703515
Target:  5'- --gGUGGcCGCgacGGUGGaUGcCAGCGCCAu -3'
miRNA:   3'- gaaCACCaGCG---UCACC-GC-GUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 17464 0.68 0.683145
Target:  5'- ----cGGUCGUacAGgccggGGCGCAGUACUAg -3'
miRNA:   3'- gaacaCCAGCG--UCa----CCGCGUCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.