Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 19811 | 0.7 | 0.559704 |
Target: 5'- ----cGGUgGCGGUGGCGgGGCGgCAg -3' miRNA: 3'- gaacaCCAgCGUCACCGCgUCGUgGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 106953 | 0.7 | 0.580099 |
Target: 5'- --cGUGGcgCGCAG-GcGCGCGGcCGCCAg -3' miRNA: 3'- gaaCACCa-GCGUCaC-CGCGUC-GUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 122009 | 0.7 | 0.590356 |
Target: 5'- ----cGGcCGCGGcaggcGGCGCGGCGCCGc -3' miRNA: 3'- gaacaCCaGCGUCa----CCGCGUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 58309 | 0.7 | 0.590356 |
Target: 5'- ---uUGGcgCGCGGUGGCucCGGCACCGg -3' miRNA: 3'- gaacACCa-GCGUCACCGc-GUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 42246 | 0.7 | 0.569879 |
Target: 5'- cCUUG-GcGUCGguGgugGGCaGCAGCACCu -3' miRNA: 3'- -GAACaC-CAGCguCa--CCG-CGUCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 54515 | 0.7 | 0.559704 |
Target: 5'- --gGUGGgggGCGGUGGgGCGGgGCCGu -3' miRNA: 3'- gaaCACCag-CGUCACCgCGUCgUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 27970 | 0.71 | 0.549581 |
Target: 5'- ----cGGUCGCGGUGGagGCGGCcgcgGCCGg -3' miRNA: 3'- gaacaCCAGCGUCACCg-CGUCG----UGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 81417 | 0.71 | 0.499938 |
Target: 5'- ---aUGGUCGCA--GGCGCacAGCGCCAg -3' miRNA: 3'- gaacACCAGCGUcaCCGCG--UCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 30990 | 0.71 | 0.539515 |
Target: 5'- ---aUGGccgCGCAG-GGCGCGGCGCUg -3' miRNA: 3'- gaacACCa--GCGUCaCCGCGUCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 69674 | 0.71 | 0.549581 |
Target: 5'- --cGUGGUagGCAGcguugGGCGCGGgGCCGg -3' miRNA: 3'- gaaCACCAg-CGUCa----CCGCGUCgUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 49913 | 0.71 | 0.509718 |
Target: 5'- ----cGGcCGCGGUGGCGCuGCGCg- -3' miRNA: 3'- gaacaCCaGCGUCACCGCGuCGUGgu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 133803 | 0.71 | 0.539515 |
Target: 5'- ---aUGGccgCGCAG-GGCGCGGCGCUg -3' miRNA: 3'- gaacACCa--GCGUCaCCGCGUCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 84730 | 0.71 | 0.499938 |
Target: 5'- --gGUGGU-GCAGgcaGGCGC-GCACCAa -3' miRNA: 3'- gaaCACCAgCGUCa--CCGCGuCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 130783 | 0.71 | 0.549581 |
Target: 5'- ----cGGUCGCGGUGGagGCGGCcgcgGCCGg -3' miRNA: 3'- gaacaCCAGCGUCACCg-CGUCG----UGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 87870 | 0.72 | 0.471118 |
Target: 5'- -cUGUGGUCGCuGUGGCcgcGCGGCuuuCUg -3' miRNA: 3'- gaACACCAGCGuCACCG---CGUCGu--GGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 12399 | 0.72 | 0.480633 |
Target: 5'- -gUGUGGUCGguGaccGCGC-GCACCAa -3' miRNA: 3'- gaACACCAGCguCac-CGCGuCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 35732 | 0.72 | 0.490241 |
Target: 5'- --cGUGGcCGCGGUGGaGUGGCugCAg -3' miRNA: 3'- gaaCACCaGCGUCACCgCGUCGugGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 82501 | 0.72 | 0.452381 |
Target: 5'- --cGUaGGUCGCGucUGGCGCGGCGCUc -3' miRNA: 3'- gaaCA-CCAGCGUc-ACCGCGUCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 28826 | 0.72 | 0.490241 |
Target: 5'- ----aGG-CGCGGUGGUGCGGCugCu -3' miRNA: 3'- gaacaCCaGCGUCACCGCGUCGugGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 32273 | 0.72 | 0.480633 |
Target: 5'- --cGUGGcUCGCGccguccgcGUGGCGCGGCcCCGc -3' miRNA: 3'- gaaCACC-AGCGU--------CACCGCGUCGuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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