Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 6412 | 3' | -57.3 | NC_001847.1 | + | 78191 | 0.73 | 0.390208 |
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Target: 5'- -aUGUGGUCGUAgGUGaacUGCAGCGCCGc -3' miRNA: 3'- gaACACCAGCGU-CACc--GCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 58509 | 0.73 | 0.425059 |
|
Target: 5'- aUUGUGG-CGCGG-GGCGCccgaGGUACCGc -3' miRNA: 3'- gAACACCaGCGUCaCCGCG----UCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 42337 | 0.73 | 0.398745 |
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Target: 5'- -cUGUGGgCGCccguGUGGCGCGGCGgCGa -3' miRNA: 3'- gaACACCaGCGu---CACCGCGUCGUgGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 89211 | 0.74 | 0.349358 |
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Target: 5'- gCUUGUGuuugCGCAGUGGCacGCGGCGCUc -3' miRNA: 3'- -GAACACca--GCGUCACCG--CGUCGUGGu -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 43240 | 0.75 | 0.311647 |
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Target: 5'- --gGUGGgggcgCGCGGgcGGCGCGGCGCCc -3' miRNA: 3'- gaaCACCa----GCGUCa-CCGCGUCGUGGu -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 82336 | 0.75 | 0.304487 |
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Target: 5'- ----aGGUC-CAGUGuGCGCGGCGCCAg -3' miRNA: 3'- gaacaCCAGcGUCAC-CGCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 116679 | 0.76 | 0.297453 |
|
Target: 5'- -gUGUGGguccggCGCuGcgGGCGCGGCACCGc -3' miRNA: 3'- gaACACCa-----GCGuCa-CCGCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 118767 | 0.76 | 0.283765 |
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Target: 5'- gUUGUGGcgCGCGGUGuGaGCGGCACCGg -3' miRNA: 3'- gAACACCa-GCGUCAC-CgCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 64695 | 0.76 | 0.283765 |
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Target: 5'- --cGU-GUCGCAGUgcgucaGGCGCGGCACCGc -3' miRNA: 3'- gaaCAcCAGCGUCA------CCGCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 83259 | 1.08 | 0.00179 |
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Target: 5'- gCUUGUGGUCGCAGUGGCGCAGCACCAg -3' miRNA: 3'- -GAACACCAGCGUCACCGCGUCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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