Results 1 - 20 of 90 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 83259 | 1.08 | 0.00179 |
Target: 5'- gCUUGUGGUCGCAGUGGCGCAGCACCAg -3' miRNA: 3'- -GAACACCAGCGUCACCGCGUCGUGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 118767 | 0.76 | 0.283765 |
Target: 5'- gUUGUGGcgCGCGGUGuGaGCGGCACCGg -3' miRNA: 3'- gAACACCa-GCGUCAC-CgCGUCGUGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 64695 | 0.76 | 0.283765 |
Target: 5'- --cGU-GUCGCAGUgcgucaGGCGCGGCACCGc -3' miRNA: 3'- gaaCAcCAGCGUCA------CCGCGUCGUGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 116679 | 0.76 | 0.297453 |
Target: 5'- -gUGUGGguccggCGCuGcgGGCGCGGCACCGc -3' miRNA: 3'- gaACACCa-----GCGuCa-CCGCGUCGUGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 82336 | 0.75 | 0.304487 |
Target: 5'- ----aGGUC-CAGUGuGCGCGGCGCCAg -3' miRNA: 3'- gaacaCCAGcGUCAC-CGCGUCGUGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 43240 | 0.75 | 0.311647 |
Target: 5'- --gGUGGgggcgCGCGGgcGGCGCGGCGCCc -3' miRNA: 3'- gaaCACCa----GCGUCa-CCGCGUCGUGGu -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 89211 | 0.74 | 0.349358 |
Target: 5'- gCUUGUGuuugCGCAGUGGCacGCGGCGCUc -3' miRNA: 3'- -GAACACca--GCGUCACCG--CGUCGUGGu -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 42337 | 0.73 | 0.398745 |
Target: 5'- -cUGUGGgCGCccguGUGGCGCGGCGgCGa -3' miRNA: 3'- gaACACCaGCGu---CACCGCGUCGUgGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 58509 | 0.73 | 0.425059 |
Target: 5'- aUUGUGG-CGCGG-GGCGCccgaGGUACCGc -3' miRNA: 3'- gAACACCaGCGUCaCCGCG----UCGUGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 78191 | 0.73 | 0.390208 |
Target: 5'- -aUGUGGUCGUAgGUGaacUGCAGCGCCGc -3' miRNA: 3'- gaACACCAGCGU-CACc--GCGUCGUGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 87870 | 0.72 | 0.471118 |
Target: 5'- -cUGUGGUCGCuGUGGCcgcGCGGCuuuCUg -3' miRNA: 3'- gaACACCAGCGuCACCG---CGUCGu--GGu -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 35732 | 0.72 | 0.490241 |
Target: 5'- --cGUGGcCGCGGUGGaGUGGCugCAg -3' miRNA: 3'- gaaCACCaGCGUCACCgCGUCGugGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 28826 | 0.72 | 0.490241 |
Target: 5'- ----aGG-CGCGGUGGUGCGGCugCu -3' miRNA: 3'- gaacaCCaGCGUCACCGCGUCGugGu -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 12399 | 0.72 | 0.480633 |
Target: 5'- -gUGUGGUCGguGaccGCGC-GCACCAa -3' miRNA: 3'- gaACACCAGCguCac-CGCGuCGUGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 82501 | 0.72 | 0.452381 |
Target: 5'- --cGUaGGUCGCGucUGGCGCGGCGCUc -3' miRNA: 3'- gaaCA-CCAGCGUc-ACCGCGUCGUGGu -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 32273 | 0.72 | 0.480633 |
Target: 5'- --cGUGGcUCGCGccguccgcGUGGCGCGGCcCCGc -3' miRNA: 3'- gaaCACC-AGCGU--------CACCGCGUCGuGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 27970 | 0.71 | 0.549581 |
Target: 5'- ----cGGUCGCGGUGGagGCGGCcgcgGCCGg -3' miRNA: 3'- gaacaCCAGCGUCACCg-CGUCG----UGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 69674 | 0.71 | 0.549581 |
Target: 5'- --cGUGGUagGCAGcguugGGCGCGGgGCCGg -3' miRNA: 3'- gaaCACCAg-CGUCa----CCGCGUCgUGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 81417 | 0.71 | 0.499938 |
Target: 5'- ---aUGGUCGCA--GGCGCacAGCGCCAg -3' miRNA: 3'- gaacACCAGCGUcaCCGCG--UCGUGGU- -5' |
|||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 30990 | 0.71 | 0.539515 |
Target: 5'- ---aUGGccgCGCAG-GGCGCGGCGCUg -3' miRNA: 3'- gaacACCa--GCGUCaCCGCGUCGUGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home