miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 49913 0.71 0.509718
Target:  5'- ----cGGcCGCGGUGGCGCuGCGCg- -3'
miRNA:   3'- gaacaCCaGCGUCACCGCGuCGUGgu -5'
6412 3' -57.3 NC_001847.1 + 133803 0.71 0.539515
Target:  5'- ---aUGGccgCGCAG-GGCGCGGCGCUg -3'
miRNA:   3'- gaacACCa--GCGUCaCCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 130783 0.71 0.549581
Target:  5'- ----cGGUCGCGGUGGagGCGGCcgcgGCCGg -3'
miRNA:   3'- gaacaCCAGCGUCACCg-CGUCG----UGGU- -5'
6412 3' -57.3 NC_001847.1 + 84730 0.71 0.499938
Target:  5'- --gGUGGU-GCAGgcaGGCGC-GCACCAa -3'
miRNA:   3'- gaaCACCAgCGUCa--CCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 122009 0.7 0.590356
Target:  5'- ----cGGcCGCGGcaggcGGCGCGGCGCCGc -3'
miRNA:   3'- gaacaCCaGCGUCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 106953 0.7 0.580099
Target:  5'- --cGUGGcgCGCAG-GcGCGCGGcCGCCAg -3'
miRNA:   3'- gaaCACCa-GCGUCaC-CGCGUC-GUGGU- -5'
6412 3' -57.3 NC_001847.1 + 42246 0.7 0.569879
Target:  5'- cCUUG-GcGUCGguGgugGGCaGCAGCACCu -3'
miRNA:   3'- -GAACaC-CAGCguCa--CCG-CGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 19811 0.7 0.559704
Target:  5'- ----cGGUgGCGGUGGCGgGGCGgCAg -3'
miRNA:   3'- gaacaCCAgCGUCACCGCgUCGUgGU- -5'
6412 3' -57.3 NC_001847.1 + 54515 0.7 0.559704
Target:  5'- --gGUGGgggGCGGUGGgGCGGgGCCGu -3'
miRNA:   3'- gaaCACCag-CGUCACCgCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 58309 0.7 0.590356
Target:  5'- ---uUGGcgCGCGGUGGCucCGGCACCGg -3'
miRNA:   3'- gaacACCa-GCGUCACCGc-GUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 32318 0.69 0.610957
Target:  5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3'
miRNA:   3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5'
6412 3' -57.3 NC_001847.1 + 15936 0.69 0.621286
Target:  5'- -------cCGCGGUGGcCGCGGCGCCGa -3'
miRNA:   3'- gaacaccaGCGUCACC-GCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 5058 0.69 0.631623
Target:  5'- ----cGcGUCGCGGUcgGGCGCGGC-CCAg -3'
miRNA:   3'- gaacaC-CAGCGUCA--CCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 95294 0.69 0.65229
Target:  5'- gCUUGcGGcCGCuGgcgccuccaGGCGCGGCGCCGg -3'
miRNA:   3'- -GAACaCCaGCGuCa--------CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 135131 0.69 0.610957
Target:  5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3'
miRNA:   3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5'
6412 3' -57.3 NC_001847.1 + 62669 0.69 0.646093
Target:  5'- ---cUGGUacgccaucaucagcaCGCcGUGGUGCAGCGCCGc -3'
miRNA:   3'- gaacACCA---------------GCGuCACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 116576 0.69 0.64196
Target:  5'- --cGUGGgcaucugCGCucugGGCGCAGCGCUg -3'
miRNA:   3'- gaaCACCa------GCGuca-CCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 11906 0.69 0.64196
Target:  5'- ----gGGUcCGCGcUGGCGCGGCAUCGu -3'
miRNA:   3'- gaacaCCA-GCGUcACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 88090 0.69 0.621286
Target:  5'- -cUGgagcuGUCgGCGGUGGCGCGGCugGCCGg -3'
miRNA:   3'- gaACac---CAG-CGUCACCGCGUCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 30048 0.69 0.60683
Target:  5'- --cGUGGgcgacguugccggCGCGGUGGCGCGGCu--- -3'
miRNA:   3'- gaaCACCa------------GCGUCACCGCGUCGuggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.