miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 88090 0.69 0.621286
Target:  5'- -cUGgagcuGUCgGCGGUGGCGCGGCugGCCGg -3'
miRNA:   3'- gaACac---CAG-CGUCACCGCGUCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 11906 0.69 0.64196
Target:  5'- ----gGGUcCGCGcUGGCGCGGCAUCGu -3'
miRNA:   3'- gaacaCCA-GCGUcACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 116576 0.69 0.64196
Target:  5'- --cGUGGgcaucugCGCucugGGCGCAGCGCUg -3'
miRNA:   3'- gaaCACCa------GCGuca-CCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 95294 0.69 0.65229
Target:  5'- gCUUGcGGcCGCuGgcgccuccaGGCGCGGCGCCGg -3'
miRNA:   3'- -GAACaCCaGCGuCa--------CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 76437 0.68 0.703515
Target:  5'- --gGUGGcCGCgacGGUGGaUGcCAGCGCCAu -3'
miRNA:   3'- gaaCACCaGCG---UCACC-GC-GUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 54106 0.68 0.723639
Target:  5'- ----aGGcgcucgccgCGCGGgaGGCGCAGCACCGg -3'
miRNA:   3'- gaacaCCa--------GCGUCa-CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 49366 0.68 0.693356
Target:  5'- -----cGUCGCGGUGGuCGCcGGCACUAa -3'
miRNA:   3'- gaacacCAGCGUCACC-GCG-UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 109611 0.68 0.713613
Target:  5'- ----aGGUCGCGGagccGGUGC-GCGCCAa -3'
miRNA:   3'- gaacaCCAGCGUCa---CCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 10856 0.68 0.693356
Target:  5'- --cGUGGccgaggCGCGGcgGGCGCgGGCGCCc -3'
miRNA:   3'- gaaCACCa-----GCGUCa-CCGCG-UCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 17464 0.68 0.683145
Target:  5'- ----cGGUCGUacAGgccggGGCGCAGUACUAg -3'
miRNA:   3'- gaacaCCAGCG--UCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 99163 0.68 0.723639
Target:  5'- cCUUGUGG-CGcCAGccGGCgggagccacaGCAGCGCCGc -3'
miRNA:   3'- -GAACACCaGC-GUCa-CCG----------CGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 17319 0.68 0.713613
Target:  5'- ----cGGUcCGCucuuGUGGUGCAGgGCCAc -3'
miRNA:   3'- gaacaCCA-GCGu---CACCGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 87048 0.68 0.713613
Target:  5'- ----cGGUCGCGGUGGUcgagGCAGCGg-- -3'
miRNA:   3'- gaacaCCAGCGUCACCG----CGUCGUggu -5'
6412 3' -57.3 NC_001847.1 + 10693 0.68 0.723639
Target:  5'- ----cGGUCGCGcccgGGCGCGGC-CCGc -3'
miRNA:   3'- gaacaCCAGCGUca--CCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 78862 0.68 0.713613
Target:  5'- -gUGUGcUCGCGGUGcgcgcccucGCGCAGC-CCGu -3'
miRNA:   3'- gaACACcAGCGUCAC---------CGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 113506 0.68 0.723639
Target:  5'- ----cGGUCGCGcccgGGCGCGGC-CCGc -3'
miRNA:   3'- gaacaCCAGCGUca--CCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 2756 0.67 0.743442
Target:  5'- ----cGG-CGCGGcGGCGCcGGCGCCGg -3'
miRNA:   3'- gaacaCCaGCGUCaCCGCG-UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 47052 0.67 0.762848
Target:  5'- --gGUGcguGUCGCGGccGGCGCGGUcgauGCCAg -3'
miRNA:   3'- gaaCAC---CAGCGUCa-CCGCGUCG----UGGU- -5'
6412 3' -57.3 NC_001847.1 + 101911 0.67 0.772378
Target:  5'- ----aGGcgcCGCGGcgcccGGCGCGGCGCCAa -3'
miRNA:   3'- gaacaCCa--GCGUCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 92279 0.67 0.781781
Target:  5'- --cGUGG-CGCGGU-GCGCGGCuaggaaguGCCGg -3'
miRNA:   3'- gaaCACCaGCGUCAcCGCGUCG--------UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.