Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 49950 | 0.67 | 0.7532 |
Target: 5'- --cGUGGcgCGCGGUGcCGC-GCACCu -3' miRNA: 3'- gaaCACCa-GCGUCACcGCGuCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 5811 | 0.67 | 0.7532 |
Target: 5'- gCUUGcgcuUGGcgCGCcgGGUGcGUGCAGCACCc -3' miRNA: 3'- -GAAC----ACCa-GCG--UCAC-CGCGUCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 85509 | 0.67 | 0.766675 |
Target: 5'- -cUGUGGUCGgcgucUccaaaaacagcgccgGGUGGCGC-GCGCCGa -3' miRNA: 3'- gaACACCAGC-----G---------------UCACCGCGuCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 103010 | 0.67 | 0.781781 |
Target: 5'- ----cGGgCGCGGcGGCGCccAGCGCCGg -3' miRNA: 3'- gaacaCCaGCGUCaCCGCG--UCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 75784 | 0.67 | 0.781781 |
Target: 5'- ----cGGcCGCGGgcucGGCGCGGCGCgCGa -3' miRNA: 3'- gaacaCCaGCGUCa---CCGCGUCGUG-GU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 92279 | 0.67 | 0.781781 |
Target: 5'- --cGUGG-CGCGGU-GCGCGGCuaggaaguGCCGg -3' miRNA: 3'- gaaCACCaGCGUCAcCGCGUCG--------UGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 40888 | 0.67 | 0.733586 |
Target: 5'- --cGUGGaCGCAG-GGCGCgAGCcgcuCCAc -3' miRNA: 3'- gaaCACCaGCGUCaCCGCG-UCGu---GGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 80855 | 0.67 | 0.733586 |
Target: 5'- --gGUGGUCGUAGcacGCGCggaugAGCGCCu -3' miRNA: 3'- gaaCACCAGCGUCac-CGCG-----UCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 2756 | 0.67 | 0.743442 |
Target: 5'- ----cGG-CGCGGcGGCGCcGGCGCCGg -3' miRNA: 3'- gaacaCCaGCGUCaCCGCG-UCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 47052 | 0.67 | 0.762848 |
Target: 5'- --gGUGcguGUCGCGGccGGCGCGGUcgauGCCAg -3' miRNA: 3'- gaaCAC---CAGCGUCa-CCGCGUCG----UGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 101911 | 0.67 | 0.772378 |
Target: 5'- ----aGGcgcCGCGGcgcccGGCGCGGCGCCAa -3' miRNA: 3'- gaacaCCa--GCGUCa----CCGCGUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 106212 | 0.66 | 0.826558 |
Target: 5'- gCUUcUGGUCGCAGUcGuaGCGGCggcucaugGCCAc -3' miRNA: 3'- -GAAcACCAGCGUCA-CcgCGUCG--------UGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 95339 | 0.66 | 0.80913 |
Target: 5'- ----aGG-CGCAGggGGCGCAGCcaggggagcgggGCCAg -3' miRNA: 3'- gaacaCCaGCGUCa-CCGCGUCG------------UGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 81975 | 0.66 | 0.791046 |
Target: 5'- ----gGGUCGCAGcGcccgaGCAGCGCCAg -3' miRNA: 3'- gaacaCCAGCGUCaCcg---CGUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 128368 | 0.66 | 0.81793 |
Target: 5'- --gGUGGccacggaGCAGcUGGCGCcucGCACCGg -3' miRNA: 3'- gaaCACCag-----CGUC-ACCGCGu--CGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 12940 | 0.66 | 0.800165 |
Target: 5'- -gUGUcGUCGUgcGGUGGgGCGGCggGCCGg -3' miRNA: 3'- gaACAcCAGCG--UCACCgCGUCG--UGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 126926 | 0.66 | 0.81793 |
Target: 5'- --cGUGG-CGCAGcugcuucugcUGGCaCGGCGCCu -3' miRNA: 3'- gaaCACCaGCGUC----------ACCGcGUCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 108360 | 0.66 | 0.80913 |
Target: 5'- -cUGcGGcgCGCAGgagGGCGCGcGCACUg -3' miRNA: 3'- gaACaCCa-GCGUCa--CCGCGU-CGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 90321 | 0.66 | 0.80913 |
Target: 5'- --gGUGGggcCGCcgGGgccgggGGCGCAGcCGCCAa -3' miRNA: 3'- gaaCACCa--GCG--UCa-----CCGCGUC-GUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 73002 | 0.66 | 0.80913 |
Target: 5'- ---cUGGcCGCAGcgcgGGCGCGGaACCAg -3' miRNA: 3'- gaacACCaGCGUCa---CCGCGUCgUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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