miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 83259 1.08 0.00179
Target:  5'- gCUUGUGGUCGCAGUGGCGCAGCACCAg -3'
miRNA:   3'- -GAACACCAGCGUCACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 64695 0.76 0.283765
Target:  5'- --cGU-GUCGCAGUgcgucaGGCGCGGCACCGc -3'
miRNA:   3'- gaaCAcCAGCGUCA------CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 118767 0.76 0.283765
Target:  5'- gUUGUGGcgCGCGGUGuGaGCGGCACCGg -3'
miRNA:   3'- gAACACCa-GCGUCAC-CgCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 116679 0.76 0.297453
Target:  5'- -gUGUGGguccggCGCuGcgGGCGCGGCACCGc -3'
miRNA:   3'- gaACACCa-----GCGuCa-CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 82336 0.75 0.304487
Target:  5'- ----aGGUC-CAGUGuGCGCGGCGCCAg -3'
miRNA:   3'- gaacaCCAGcGUCAC-CGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 43240 0.75 0.311647
Target:  5'- --gGUGGgggcgCGCGGgcGGCGCGGCGCCc -3'
miRNA:   3'- gaaCACCa----GCGUCa-CCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 89211 0.74 0.349358
Target:  5'- gCUUGUGuuugCGCAGUGGCacGCGGCGCUc -3'
miRNA:   3'- -GAACACca--GCGUCACCG--CGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 78191 0.73 0.390208
Target:  5'- -aUGUGGUCGUAgGUGaacUGCAGCGCCGc -3'
miRNA:   3'- gaACACCAGCGU-CACc--GCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 42337 0.73 0.398745
Target:  5'- -cUGUGGgCGCccguGUGGCGCGGCGgCGa -3'
miRNA:   3'- gaACACCaGCGu---CACCGCGUCGUgGU- -5'
6412 3' -57.3 NC_001847.1 + 58509 0.73 0.425059
Target:  5'- aUUGUGG-CGCGG-GGCGCccgaGGUACCGc -3'
miRNA:   3'- gAACACCaGCGUCaCCGCG----UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 82501 0.72 0.452381
Target:  5'- --cGUaGGUCGCGucUGGCGCGGCGCUc -3'
miRNA:   3'- gaaCA-CCAGCGUc-ACCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 87870 0.72 0.471118
Target:  5'- -cUGUGGUCGCuGUGGCcgcGCGGCuuuCUg -3'
miRNA:   3'- gaACACCAGCGuCACCG---CGUCGu--GGu -5'
6412 3' -57.3 NC_001847.1 + 32273 0.72 0.480633
Target:  5'- --cGUGGcUCGCGccguccgcGUGGCGCGGCcCCGc -3'
miRNA:   3'- gaaCACC-AGCGU--------CACCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 12399 0.72 0.480633
Target:  5'- -gUGUGGUCGguGaccGCGC-GCACCAa -3'
miRNA:   3'- gaACACCAGCguCac-CGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 28826 0.72 0.490241
Target:  5'- ----aGG-CGCGGUGGUGCGGCugCu -3'
miRNA:   3'- gaacaCCaGCGUCACCGCGUCGugGu -5'
6412 3' -57.3 NC_001847.1 + 35732 0.72 0.490241
Target:  5'- --cGUGGcCGCGGUGGaGUGGCugCAg -3'
miRNA:   3'- gaaCACCaGCGUCACCgCGUCGugGU- -5'
6412 3' -57.3 NC_001847.1 + 81417 0.71 0.499938
Target:  5'- ---aUGGUCGCA--GGCGCacAGCGCCAg -3'
miRNA:   3'- gaacACCAGCGUcaCCGCG--UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 84730 0.71 0.499938
Target:  5'- --gGUGGU-GCAGgcaGGCGC-GCACCAa -3'
miRNA:   3'- gaaCACCAgCGUCa--CCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 49913 0.71 0.509718
Target:  5'- ----cGGcCGCGGUGGCGCuGCGCg- -3'
miRNA:   3'- gaacaCCaGCGUCACCGCGuCGUGgu -5'
6412 3' -57.3 NC_001847.1 + 30990 0.71 0.539515
Target:  5'- ---aUGGccgCGCAG-GGCGCGGCGCUg -3'
miRNA:   3'- gaacACCa--GCGUCaCCGCGUCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.