miRNA display CGI


Results 61 - 80 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 74358 0.67 0.743442
Target:  5'- --gGUGGcgcgCGUGGUGGCGC-GCGCg- -3'
miRNA:   3'- gaaCACCa---GCGUCACCGCGuCGUGgu -5'
6412 3' -57.3 NC_001847.1 + 2756 0.67 0.743442
Target:  5'- ----cGG-CGCGGcGGCGCcGGCGCCGg -3'
miRNA:   3'- gaacaCCaGCGUCaCCGCG-UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 5811 0.67 0.7532
Target:  5'- gCUUGcgcuUGGcgCGCcgGGUGcGUGCAGCACCc -3'
miRNA:   3'- -GAAC----ACCa-GCG--UCAC-CGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 49950 0.67 0.7532
Target:  5'- --cGUGGcgCGCGGUGcCGC-GCACCu -3'
miRNA:   3'- gaaCACCa-GCGUCACcGCGuCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 57676 0.67 0.7532
Target:  5'- --gGUGGgCaCGGUGGUGCugGGCGCCGc -3'
miRNA:   3'- gaaCACCaGcGUCACCGCG--UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 47052 0.67 0.762848
Target:  5'- --gGUGcguGUCGCGGccGGCGCGGUcgauGCCAg -3'
miRNA:   3'- gaaCAC---CAGCGUCa-CCGCGUCG----UGGU- -5'
6412 3' -57.3 NC_001847.1 + 85509 0.67 0.766675
Target:  5'- -cUGUGGUCGgcgucUccaaaaacagcgccgGGUGGCGC-GCGCCGa -3'
miRNA:   3'- gaACACCAGC-----G---------------UCACCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 101911 0.67 0.772378
Target:  5'- ----aGGcgcCGCGGcgcccGGCGCGGCGCCAa -3'
miRNA:   3'- gaacaCCa--GCGUCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 103010 0.67 0.781781
Target:  5'- ----cGGgCGCGGcGGCGCccAGCGCCGg -3'
miRNA:   3'- gaacaCCaGCGUCaCCGCG--UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 92279 0.67 0.781781
Target:  5'- --cGUGG-CGCGGU-GCGCGGCuaggaaguGCCGg -3'
miRNA:   3'- gaaCACCaGCGUCAcCGCGUCG--------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 75784 0.67 0.781781
Target:  5'- ----cGGcCGCGGgcucGGCGCGGCGCgCGa -3'
miRNA:   3'- gaacaCCaGCGUCa---CCGCGUCGUG-GU- -5'
6412 3' -57.3 NC_001847.1 + 59553 0.66 0.791046
Target:  5'- --gGUGGggGCGGcgGGgGCGGUGCCGg -3'
miRNA:   3'- gaaCACCagCGUCa-CCgCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 48629 0.66 0.791046
Target:  5'- -aUGUGaacGcCGCGGcGGCGgGGCGCCGc -3'
miRNA:   3'- gaACAC---CaGCGUCaCCGCgUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 81975 0.66 0.791046
Target:  5'- ----gGGUCGCAGcGcccgaGCAGCGCCAg -3'
miRNA:   3'- gaacaCCAGCGUCaCcg---CGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 33898 0.66 0.800165
Target:  5'- --cGUGGcCGCGG-GcGUGCAGgACCGc -3'
miRNA:   3'- gaaCACCaGCGUCaC-CGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 12940 0.66 0.800165
Target:  5'- -gUGUcGUCGUgcGGUGGgGCGGCggGCCGg -3'
miRNA:   3'- gaACAcCAGCG--UCACCgCGUCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 16807 0.66 0.800165
Target:  5'- ----cGGUCGCGGagaacucgGGCaGCGGUGCCGg -3'
miRNA:   3'- gaacaCCAGCGUCa-------CCG-CGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 14087 0.66 0.800165
Target:  5'- --cGUGGacaUCGCGGaGGCGCuGGCggACCAc -3'
miRNA:   3'- gaaCACC---AGCGUCaCCGCG-UCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 95339 0.66 0.80913
Target:  5'- ----aGG-CGCAGggGGCGCAGCcaggggagcgggGCCAg -3'
miRNA:   3'- gaacaCCaGCGUCa-CCGCGUCG------------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 73002 0.66 0.80913
Target:  5'- ---cUGGcCGCAGcgcgGGCGCGGaACCAg -3'
miRNA:   3'- gaacACCaGCGUCa---CCGCGUCgUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.