miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 17319 0.68 0.713613
Target:  5'- ----cGGUcCGCucuuGUGGUGCAGgGCCAc -3'
miRNA:   3'- gaacaCCA-GCGu---CACCGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 87048 0.68 0.713613
Target:  5'- ----cGGUCGCGGUGGUcgagGCAGCGg-- -3'
miRNA:   3'- gaacaCCAGCGUCACCG----CGUCGUggu -5'
6412 3' -57.3 NC_001847.1 + 76437 0.68 0.703515
Target:  5'- --gGUGGcCGCgacGGUGGaUGcCAGCGCCAu -3'
miRNA:   3'- gaaCACCaGCG---UCACC-GC-GUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 10856 0.68 0.693356
Target:  5'- --cGUGGccgaggCGCGGcgGGCGCgGGCGCCc -3'
miRNA:   3'- gaaCACCa-----GCGUCa-CCGCG-UCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 49366 0.68 0.693356
Target:  5'- -----cGUCGCGGUGGuCGCcGGCACUAa -3'
miRNA:   3'- gaacacCAGCGUCACC-GCG-UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 17464 0.68 0.683145
Target:  5'- ----cGGUCGUacAGgccggGGCGCAGUACUAg -3'
miRNA:   3'- gaacaCCAGCG--UCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 68124 0.69 0.666722
Target:  5'- --gGUGGUCGCGGgcgaGcGCGCgucugccccuucuccGGCGCCGc -3'
miRNA:   3'- gaaCACCAGCGUCa---C-CGCG---------------UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 95294 0.69 0.65229
Target:  5'- gCUUGcGGcCGCuGgcgccuccaGGCGCGGCGCCGg -3'
miRNA:   3'- -GAACaCCaGCGuCa--------CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 62669 0.69 0.646093
Target:  5'- ---cUGGUacgccaucaucagcaCGCcGUGGUGCAGCGCCGc -3'
miRNA:   3'- gaacACCA---------------GCGuCACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 116576 0.69 0.64196
Target:  5'- --cGUGGgcaucugCGCucugGGCGCAGCGCUg -3'
miRNA:   3'- gaaCACCa------GCGuca-CCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 11906 0.69 0.64196
Target:  5'- ----gGGUcCGCGcUGGCGCGGCAUCGu -3'
miRNA:   3'- gaacaCCA-GCGUcACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 4582 0.69 0.64196
Target:  5'- -gUGcgGGUCGCGGU-GCGCGGCgacgaaggcgGCCAc -3'
miRNA:   3'- gaACa-CCAGCGUCAcCGCGUCG----------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 53714 0.69 0.631623
Target:  5'- -cUGUGGgccgGCGGcUGGCGCuguGCGCCu -3'
miRNA:   3'- gaACACCag--CGUC-ACCGCGu--CGUGGu -5'
6412 3' -57.3 NC_001847.1 + 60751 0.69 0.631623
Target:  5'- ----cGG-CGCGGUGGCGguuuuccagcucCAGCGCCAc -3'
miRNA:   3'- gaacaCCaGCGUCACCGC------------GUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 5058 0.69 0.631623
Target:  5'- ----cGcGUCGCGGUcgGGCGCGGC-CCAg -3'
miRNA:   3'- gaacaC-CAGCGUCA--CCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 88090 0.69 0.621286
Target:  5'- -cUGgagcuGUCgGCGGUGGCGCGGCugGCCGg -3'
miRNA:   3'- gaACac---CAG-CGUCACCGCGUCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 15936 0.69 0.621286
Target:  5'- -------cCGCGGUGGcCGCGGCGCCGa -3'
miRNA:   3'- gaacaccaGCGUCACC-GCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 135131 0.69 0.610957
Target:  5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3'
miRNA:   3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5'
6412 3' -57.3 NC_001847.1 + 32318 0.69 0.610957
Target:  5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3'
miRNA:   3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5'
6412 3' -57.3 NC_001847.1 + 30048 0.69 0.60683
Target:  5'- --cGUGGgcgacguugccggCGCGGUGGCGCGGCu--- -3'
miRNA:   3'- gaaCACCa------------GCGUCACCGCGUCGuggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.