miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 2756 0.67 0.743442
Target:  5'- ----cGG-CGCGGcGGCGCcGGCGCCGg -3'
miRNA:   3'- gaacaCCaGCGUCaCCGCG-UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 3399 0.66 0.826558
Target:  5'- gCUUcUGGUCGCAGUcGuaGCGGCggcucaugGCCAc -3'
miRNA:   3'- -GAAcACCAGCGUCA-CcgCGUCG--------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 4582 0.69 0.64196
Target:  5'- -gUGcgGGUCGCGGU-GCGCGGCgacgaaggcgGCCAc -3'
miRNA:   3'- gaACa-CCAGCGUCAcCGCGUCG----------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 5058 0.69 0.631623
Target:  5'- ----cGcGUCGCGGUcgGGCGCGGC-CCAg -3'
miRNA:   3'- gaacaC-CAGCGUCA--CCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 5811 0.67 0.7532
Target:  5'- gCUUGcgcuUGGcgCGCcgGGUGcGUGCAGCACCc -3'
miRNA:   3'- -GAAC----ACCa-GCG--UCAC-CGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 10693 0.68 0.723639
Target:  5'- ----cGGUCGCGcccgGGCGCGGC-CCGc -3'
miRNA:   3'- gaacaCCAGCGUca--CCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 10856 0.68 0.693356
Target:  5'- --cGUGGccgaggCGCGGcgGGCGCgGGCGCCc -3'
miRNA:   3'- gaaCACCa-----GCGUCa-CCGCG-UCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 11906 0.69 0.64196
Target:  5'- ----gGGUcCGCGcUGGCGCGGCAUCGu -3'
miRNA:   3'- gaacaCCA-GCGUcACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 12399 0.72 0.480633
Target:  5'- -gUGUGGUCGguGaccGCGC-GCACCAa -3'
miRNA:   3'- gaACACCAGCguCac-CGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 12940 0.66 0.800165
Target:  5'- -gUGUcGUCGUgcGGUGGgGCGGCggGCCGg -3'
miRNA:   3'- gaACAcCAGCG--UCACCgCGUCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 14087 0.66 0.800165
Target:  5'- --cGUGGacaUCGCGGaGGCGCuGGCggACCAc -3'
miRNA:   3'- gaaCACC---AGCGUCaCCGCG-UCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 15936 0.69 0.621286
Target:  5'- -------cCGCGGUGGcCGCGGCGCCGa -3'
miRNA:   3'- gaacaccaGCGUCACC-GCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 16807 0.66 0.800165
Target:  5'- ----cGGUCGCGGagaacucgGGCaGCGGUGCCGg -3'
miRNA:   3'- gaacaCCAGCGUCa-------CCG-CGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 16834 0.66 0.80913
Target:  5'- --gGUGG-CGCGGgcaucGGgGCGGCGCUc -3'
miRNA:   3'- gaaCACCaGCGUCa----CCgCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 17319 0.68 0.713613
Target:  5'- ----cGGUcCGCucuuGUGGUGCAGgGCCAc -3'
miRNA:   3'- gaacaCCA-GCGu---CACCGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 17464 0.68 0.683145
Target:  5'- ----cGGUCGUacAGgccggGGCGCAGUACUAg -3'
miRNA:   3'- gaacaCCAGCG--UCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 19811 0.7 0.559704
Target:  5'- ----cGGUgGCGGUGGCGgGGCGgCAg -3'
miRNA:   3'- gaacaCCAgCGUCACCGCgUCGUgGU- -5'
6412 3' -57.3 NC_001847.1 + 25525 0.67 0.733586
Target:  5'- ----aGG-CGCGGuUGGCGC-GCACCGg -3'
miRNA:   3'- gaacaCCaGCGUC-ACCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 27970 0.71 0.549581
Target:  5'- ----cGGUCGCGGUGGagGCGGCcgcgGCCGg -3'
miRNA:   3'- gaacaCCAGCGUCACCg-CGUCG----UGGU- -5'
6412 3' -57.3 NC_001847.1 + 28826 0.72 0.490241
Target:  5'- ----aGG-CGCGGUGGUGCGGCugCu -3'
miRNA:   3'- gaacaCCaGCGUCACCGCGUCGugGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.