miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 30048 0.69 0.60683
Target:  5'- --cGUGGgcgacguugccggCGCGGUGGCGCGGCu--- -3'
miRNA:   3'- gaaCACCa------------GCGUCACCGCGUCGuggu -5'
6412 3' -57.3 NC_001847.1 + 30429 0.66 0.80913
Target:  5'- --cGUGGcgggCGCGGaGGCGCcggGGCugCAc -3'
miRNA:   3'- gaaCACCa---GCGUCaCCGCG---UCGugGU- -5'
6412 3' -57.3 NC_001847.1 + 30990 0.71 0.539515
Target:  5'- ---aUGGccgCGCAG-GGCGCGGCGCUg -3'
miRNA:   3'- gaacACCa--GCGUCaCCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 32273 0.72 0.480633
Target:  5'- --cGUGGcUCGCGccguccgcGUGGCGCGGCcCCGc -3'
miRNA:   3'- gaaCACC-AGCGU--------CACCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 32318 0.69 0.610957
Target:  5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3'
miRNA:   3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5'
6412 3' -57.3 NC_001847.1 + 33204 0.66 0.80913
Target:  5'- aCUUGgcGG-CGCGGguggcucggcuUGGCGCcGCGCCGg -3'
miRNA:   3'- -GAACa-CCaGCGUC-----------ACCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 33898 0.66 0.800165
Target:  5'- --cGUGGcCGCGG-GcGUGCAGgACCGc -3'
miRNA:   3'- gaaCACCaGCGUCaC-CGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 35732 0.72 0.490241
Target:  5'- --cGUGGcCGCGGUGGaGUGGCugCAg -3'
miRNA:   3'- gaaCACCaGCGUCACCgCGUCGugGU- -5'
6412 3' -57.3 NC_001847.1 + 40888 0.67 0.733586
Target:  5'- --cGUGGaCGCAG-GGCGCgAGCcgcuCCAc -3'
miRNA:   3'- gaaCACCaGCGUCaCCGCG-UCGu---GGU- -5'
6412 3' -57.3 NC_001847.1 + 42246 0.7 0.569879
Target:  5'- cCUUG-GcGUCGguGgugGGCaGCAGCACCu -3'
miRNA:   3'- -GAACaC-CAGCguCa--CCG-CGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 42337 0.73 0.398745
Target:  5'- -cUGUGGgCGCccguGUGGCGCGGCGgCGa -3'
miRNA:   3'- gaACACCaGCGu---CACCGCGUCGUgGU- -5'
6412 3' -57.3 NC_001847.1 + 43240 0.75 0.311647
Target:  5'- --gGUGGgggcgCGCGGgcGGCGCGGCGCCc -3'
miRNA:   3'- gaaCACCa----GCGUCa-CCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 47052 0.67 0.762848
Target:  5'- --gGUGcguGUCGCGGccGGCGCGGUcgauGCCAg -3'
miRNA:   3'- gaaCAC---CAGCGUCa-CCGCGUCG----UGGU- -5'
6412 3' -57.3 NC_001847.1 + 48629 0.66 0.791046
Target:  5'- -aUGUGaacGcCGCGGcGGCGgGGCGCCGc -3'
miRNA:   3'- gaACAC---CaGCGUCaCCGCgUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 49366 0.68 0.693356
Target:  5'- -----cGUCGCGGUGGuCGCcGGCACUAa -3'
miRNA:   3'- gaacacCAGCGUCACC-GCG-UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 49913 0.71 0.509718
Target:  5'- ----cGGcCGCGGUGGCGCuGCGCg- -3'
miRNA:   3'- gaacaCCaGCGUCACCGCGuCGUGgu -5'
6412 3' -57.3 NC_001847.1 + 49950 0.67 0.7532
Target:  5'- --cGUGGcgCGCGGUGcCGC-GCACCu -3'
miRNA:   3'- gaaCACCa-GCGUCACcGCGuCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 53714 0.69 0.631623
Target:  5'- -cUGUGGgccgGCGGcUGGCGCuguGCGCCu -3'
miRNA:   3'- gaACACCag--CGUC-ACCGCGu--CGUGGu -5'
6412 3' -57.3 NC_001847.1 + 54106 0.68 0.723639
Target:  5'- ----aGGcgcucgccgCGCGGgaGGCGCAGCACCGg -3'
miRNA:   3'- gaacaCCa--------GCGUCa-CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 54515 0.7 0.559704
Target:  5'- --gGUGGgggGCGGUGGgGCGGgGCCGu -3'
miRNA:   3'- gaaCACCag-CGUCACCgCGUCgUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.