miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 57676 0.67 0.7532
Target:  5'- --gGUGGgCaCGGUGGUGCugGGCGCCGc -3'
miRNA:   3'- gaaCACCaGcGUCACCGCG--UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 58309 0.7 0.590356
Target:  5'- ---uUGGcgCGCGGUGGCucCGGCACCGg -3'
miRNA:   3'- gaacACCa-GCGUCACCGc-GUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 58509 0.73 0.425059
Target:  5'- aUUGUGG-CGCGG-GGCGCccgaGGUACCGc -3'
miRNA:   3'- gAACACCaGCGUCaCCGCG----UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 59553 0.66 0.791046
Target:  5'- --gGUGGggGCGGcgGGgGCGGUGCCGg -3'
miRNA:   3'- gaaCACCagCGUCa-CCgCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 60751 0.69 0.631623
Target:  5'- ----cGG-CGCGGUGGCGguuuuccagcucCAGCGCCAc -3'
miRNA:   3'- gaacaCCaGCGUCACCGC------------GUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 62669 0.69 0.646093
Target:  5'- ---cUGGUacgccaucaucagcaCGCcGUGGUGCAGCGCCGc -3'
miRNA:   3'- gaacACCA---------------GCGuCACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 64695 0.76 0.283765
Target:  5'- --cGU-GUCGCAGUgcgucaGGCGCGGCACCGc -3'
miRNA:   3'- gaaCAcCAGCGUCA------CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 68124 0.69 0.666722
Target:  5'- --gGUGGUCGCGGgcgaGcGCGCgucugccccuucuccGGCGCCGc -3'
miRNA:   3'- gaaCACCAGCGUCa---C-CGCG---------------UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 69674 0.71 0.549581
Target:  5'- --cGUGGUagGCAGcguugGGCGCGGgGCCGg -3'
miRNA:   3'- gaaCACCAg-CGUCa----CCGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 72388 0.66 0.81793
Target:  5'- --gGUGGUgGUGGUGGaCGCGGgCcCCGa -3'
miRNA:   3'- gaaCACCAgCGUCACC-GCGUC-GuGGU- -5'
6412 3' -57.3 NC_001847.1 + 73002 0.66 0.80913
Target:  5'- ---cUGGcCGCAGcgcgGGCGCGGaACCAg -3'
miRNA:   3'- gaacACCaGCGUCa---CCGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 74358 0.67 0.743442
Target:  5'- --gGUGGcgcgCGUGGUGGCGC-GCGCg- -3'
miRNA:   3'- gaaCACCa---GCGUCACCGCGuCGUGgu -5'
6412 3' -57.3 NC_001847.1 + 75784 0.67 0.781781
Target:  5'- ----cGGcCGCGGgcucGGCGCGGCGCgCGa -3'
miRNA:   3'- gaacaCCaGCGUCa---CCGCGUCGUG-GU- -5'
6412 3' -57.3 NC_001847.1 + 76437 0.68 0.703515
Target:  5'- --gGUGGcCGCgacGGUGGaUGcCAGCGCCAu -3'
miRNA:   3'- gaaCACCaGCG---UCACC-GC-GUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 78191 0.73 0.390208
Target:  5'- -aUGUGGUCGUAgGUGaacUGCAGCGCCGc -3'
miRNA:   3'- gaACACCAGCGU-CACc--GCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 78862 0.68 0.713613
Target:  5'- -gUGUGcUCGCGGUGcgcgcccucGCGCAGC-CCGu -3'
miRNA:   3'- gaACACcAGCGUCAC---------CGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 80855 0.67 0.733586
Target:  5'- --gGUGGUCGUAGcacGCGCggaugAGCGCCu -3'
miRNA:   3'- gaaCACCAGCGUCac-CGCG-----UCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 81417 0.71 0.499938
Target:  5'- ---aUGGUCGCA--GGCGCacAGCGCCAg -3'
miRNA:   3'- gaacACCAGCGUcaCCGCG--UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 81975 0.66 0.791046
Target:  5'- ----gGGUCGCAGcGcccgaGCAGCGCCAg -3'
miRNA:   3'- gaacaCCAGCGUCaCcg---CGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 82336 0.75 0.304487
Target:  5'- ----aGGUC-CAGUGuGCGCGGCGCCAg -3'
miRNA:   3'- gaacaCCAGcGUCAC-CGCGUCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.