Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6412 | 3' | -57.3 | NC_001847.1 | + | 113506 | 0.68 | 0.723639 |
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Target: 5'- ----cGGUCGCGcccgGGCGCGGC-CCGc -3' miRNA: 3'- gaacaCCAGCGUca--CCGCGUCGuGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 116576 | 0.69 | 0.64196 |
|
Target: 5'- --cGUGGgcaucugCGCucugGGCGCAGCGCUg -3' miRNA: 3'- gaaCACCa------GCGuca-CCGCGUCGUGGu -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 116679 | 0.76 | 0.297453 |
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Target: 5'- -gUGUGGguccggCGCuGcgGGCGCGGCACCGc -3' miRNA: 3'- gaACACCa-----GCGuCa-CCGCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 118767 | 0.76 | 0.283765 |
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Target: 5'- gUUGUGGcgCGCGGUGuGaGCGGCACCGg -3' miRNA: 3'- gAACACCa-GCGUCAC-CgCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 122009 | 0.7 | 0.590356 |
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Target: 5'- ----cGGcCGCGGcaggcGGCGCGGCGCCGc -3' miRNA: 3'- gaacaCCaGCGUCa----CCGCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 126926 | 0.66 | 0.81793 |
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Target: 5'- --cGUGG-CGCAGcugcuucugcUGGCaCGGCGCCu -3' miRNA: 3'- gaaCACCaGCGUC----------ACCGcGUCGUGGu -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 128368 | 0.66 | 0.81793 |
|
Target: 5'- --gGUGGccacggaGCAGcUGGCGCcucGCACCGg -3' miRNA: 3'- gaaCACCag-----CGUC-ACCGCGu--CGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 130783 | 0.71 | 0.549581 |
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Target: 5'- ----cGGUCGCGGUGGagGCGGCcgcgGCCGg -3' miRNA: 3'- gaacaCCAGCGUCACCg-CGUCG----UGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 133803 | 0.71 | 0.539515 |
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Target: 5'- ---aUGGccgCGCAG-GGCGCGGCGCUg -3' miRNA: 3'- gaacACCa--GCGUCaCCGCGUCGUGGu -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 135131 | 0.69 | 0.610957 |
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Target: 5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3' miRNA: 3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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