miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 135131 0.69 0.610957
Target:  5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3'
miRNA:   3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5'
6412 3' -57.3 NC_001847.1 + 133803 0.71 0.539515
Target:  5'- ---aUGGccgCGCAG-GGCGCGGCGCUg -3'
miRNA:   3'- gaacACCa--GCGUCaCCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 130783 0.71 0.549581
Target:  5'- ----cGGUCGCGGUGGagGCGGCcgcgGCCGg -3'
miRNA:   3'- gaacaCCAGCGUCACCg-CGUCG----UGGU- -5'
6412 3' -57.3 NC_001847.1 + 128368 0.66 0.81793
Target:  5'- --gGUGGccacggaGCAGcUGGCGCcucGCACCGg -3'
miRNA:   3'- gaaCACCag-----CGUC-ACCGCGu--CGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 126926 0.66 0.81793
Target:  5'- --cGUGG-CGCAGcugcuucugcUGGCaCGGCGCCu -3'
miRNA:   3'- gaaCACCaGCGUC----------ACCGcGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 122009 0.7 0.590356
Target:  5'- ----cGGcCGCGGcaggcGGCGCGGCGCCGc -3'
miRNA:   3'- gaacaCCaGCGUCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 118767 0.76 0.283765
Target:  5'- gUUGUGGcgCGCGGUGuGaGCGGCACCGg -3'
miRNA:   3'- gAACACCa-GCGUCAC-CgCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 116679 0.76 0.297453
Target:  5'- -gUGUGGguccggCGCuGcgGGCGCGGCACCGc -3'
miRNA:   3'- gaACACCa-----GCGuCa-CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 116576 0.69 0.64196
Target:  5'- --cGUGGgcaucugCGCucugGGCGCAGCGCUg -3'
miRNA:   3'- gaaCACCa------GCGuca-CCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 113506 0.68 0.723639
Target:  5'- ----cGGUCGCGcccgGGCGCGGC-CCGc -3'
miRNA:   3'- gaacaCCAGCGUca--CCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 109611 0.68 0.713613
Target:  5'- ----aGGUCGCGGagccGGUGC-GCGCCAa -3'
miRNA:   3'- gaacaCCAGCGUCa---CCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 108360 0.66 0.80913
Target:  5'- -cUGcGGcgCGCAGgagGGCGCGcGCACUg -3'
miRNA:   3'- gaACaCCa-GCGUCa--CCGCGU-CGUGGu -5'
6412 3' -57.3 NC_001847.1 + 106953 0.7 0.580099
Target:  5'- --cGUGGcgCGCAG-GcGCGCGGcCGCCAg -3'
miRNA:   3'- gaaCACCa-GCGUCaC-CGCGUC-GUGGU- -5'
6412 3' -57.3 NC_001847.1 + 106212 0.66 0.826558
Target:  5'- gCUUcUGGUCGCAGUcGuaGCGGCggcucaugGCCAc -3'
miRNA:   3'- -GAAcACCAGCGUCA-CcgCGUCG--------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 105569 0.67 0.743442
Target:  5'- ----cGG-CGCGGcGGCGCcGGCGCCGg -3'
miRNA:   3'- gaacaCCaGCGUCaCCGCG-UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 103010 0.67 0.781781
Target:  5'- ----cGGgCGCGGcGGCGCccAGCGCCGg -3'
miRNA:   3'- gaacaCCaGCGUCaCCGCG--UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 101911 0.67 0.772378
Target:  5'- ----aGGcgcCGCGGcgcccGGCGCGGCGCCAa -3'
miRNA:   3'- gaacaCCa--GCGUCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 99163 0.68 0.723639
Target:  5'- cCUUGUGG-CGcCAGccGGCgggagccacaGCAGCGCCGc -3'
miRNA:   3'- -GAACACCaGC-GUCa-CCG----------CGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 95339 0.66 0.80913
Target:  5'- ----aGG-CGCAGggGGCGCAGCcaggggagcgggGCCAg -3'
miRNA:   3'- gaacaCCaGCGUCa-CCGCGUCG------------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 95294 0.69 0.65229
Target:  5'- gCUUGcGGcCGCuGgcgccuccaGGCGCGGCGCCGg -3'
miRNA:   3'- -GAACaCCaGCGuCa--------CCGCGUCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.