miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 92279 0.67 0.781781
Target:  5'- --cGUGG-CGCGGU-GCGCGGCuaggaaguGCCGg -3'
miRNA:   3'- gaaCACCaGCGUCAcCGCGUCG--------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 90321 0.66 0.80913
Target:  5'- --gGUGGggcCGCcgGGgccgggGGCGCAGcCGCCAa -3'
miRNA:   3'- gaaCACCa--GCG--UCa-----CCGCGUC-GUGGU- -5'
6412 3' -57.3 NC_001847.1 + 89211 0.74 0.349358
Target:  5'- gCUUGUGuuugCGCAGUGGCacGCGGCGCUc -3'
miRNA:   3'- -GAACACca--GCGUCACCG--CGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 88090 0.69 0.621286
Target:  5'- -cUGgagcuGUCgGCGGUGGCGCGGCugGCCGg -3'
miRNA:   3'- gaACac---CAG-CGUCACCGCGUCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 87870 0.72 0.471118
Target:  5'- -cUGUGGUCGCuGUGGCcgcGCGGCuuuCUg -3'
miRNA:   3'- gaACACCAGCGuCACCG---CGUCGu--GGu -5'
6412 3' -57.3 NC_001847.1 + 87048 0.68 0.713613
Target:  5'- ----cGGUCGCGGUGGUcgagGCAGCGg-- -3'
miRNA:   3'- gaacaCCAGCGUCACCG----CGUCGUggu -5'
6412 3' -57.3 NC_001847.1 + 85509 0.67 0.766675
Target:  5'- -cUGUGGUCGgcgucUccaaaaacagcgccgGGUGGCGC-GCGCCGa -3'
miRNA:   3'- gaACACCAGC-----G---------------UCACCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 84730 0.71 0.499938
Target:  5'- --gGUGGU-GCAGgcaGGCGC-GCACCAa -3'
miRNA:   3'- gaaCACCAgCGUCa--CCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 83259 1.08 0.00179
Target:  5'- gCUUGUGGUCGCAGUGGCGCAGCACCAg -3'
miRNA:   3'- -GAACACCAGCGUCACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 82501 0.72 0.452381
Target:  5'- --cGUaGGUCGCGucUGGCGCGGCGCUc -3'
miRNA:   3'- gaaCA-CCAGCGUc-ACCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 82336 0.75 0.304487
Target:  5'- ----aGGUC-CAGUGuGCGCGGCGCCAg -3'
miRNA:   3'- gaacaCCAGcGUCAC-CGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 81975 0.66 0.791046
Target:  5'- ----gGGUCGCAGcGcccgaGCAGCGCCAg -3'
miRNA:   3'- gaacaCCAGCGUCaCcg---CGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 81417 0.71 0.499938
Target:  5'- ---aUGGUCGCA--GGCGCacAGCGCCAg -3'
miRNA:   3'- gaacACCAGCGUcaCCGCG--UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 80855 0.67 0.733586
Target:  5'- --gGUGGUCGUAGcacGCGCggaugAGCGCCu -3'
miRNA:   3'- gaaCACCAGCGUCac-CGCG-----UCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 78862 0.68 0.713613
Target:  5'- -gUGUGcUCGCGGUGcgcgcccucGCGCAGC-CCGu -3'
miRNA:   3'- gaACACcAGCGUCAC---------CGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 78191 0.73 0.390208
Target:  5'- -aUGUGGUCGUAgGUGaacUGCAGCGCCGc -3'
miRNA:   3'- gaACACCAGCGU-CACc--GCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 76437 0.68 0.703515
Target:  5'- --gGUGGcCGCgacGGUGGaUGcCAGCGCCAu -3'
miRNA:   3'- gaaCACCaGCG---UCACC-GC-GUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 75784 0.67 0.781781
Target:  5'- ----cGGcCGCGGgcucGGCGCGGCGCgCGa -3'
miRNA:   3'- gaacaCCaGCGUCa---CCGCGUCGUG-GU- -5'
6412 3' -57.3 NC_001847.1 + 74358 0.67 0.743442
Target:  5'- --gGUGGcgcgCGUGGUGGCGC-GCGCg- -3'
miRNA:   3'- gaaCACCa---GCGUCACCGCGuCGUGgu -5'
6412 3' -57.3 NC_001847.1 + 73002 0.66 0.80913
Target:  5'- ---cUGGcCGCAGcgcgGGCGCGGaACCAg -3'
miRNA:   3'- gaacACCaGCGUCa---CCGCGUCgUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.