Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 72388 | 0.66 | 0.81793 |
Target: 5'- --gGUGGUgGUGGUGGaCGCGGgCcCCGa -3' miRNA: 3'- gaaCACCAgCGUCACC-GCGUC-GuGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 69674 | 0.71 | 0.549581 |
Target: 5'- --cGUGGUagGCAGcguugGGCGCGGgGCCGg -3' miRNA: 3'- gaaCACCAg-CGUCa----CCGCGUCgUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 68124 | 0.69 | 0.666722 |
Target: 5'- --gGUGGUCGCGGgcgaGcGCGCgucugccccuucuccGGCGCCGc -3' miRNA: 3'- gaaCACCAGCGUCa---C-CGCG---------------UCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 64695 | 0.76 | 0.283765 |
Target: 5'- --cGU-GUCGCAGUgcgucaGGCGCGGCACCGc -3' miRNA: 3'- gaaCAcCAGCGUCA------CCGCGUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 62669 | 0.69 | 0.646093 |
Target: 5'- ---cUGGUacgccaucaucagcaCGCcGUGGUGCAGCGCCGc -3' miRNA: 3'- gaacACCA---------------GCGuCACCGCGUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 60751 | 0.69 | 0.631623 |
Target: 5'- ----cGG-CGCGGUGGCGguuuuccagcucCAGCGCCAc -3' miRNA: 3'- gaacaCCaGCGUCACCGC------------GUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 59553 | 0.66 | 0.791046 |
Target: 5'- --gGUGGggGCGGcgGGgGCGGUGCCGg -3' miRNA: 3'- gaaCACCagCGUCa-CCgCGUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 58509 | 0.73 | 0.425059 |
Target: 5'- aUUGUGG-CGCGG-GGCGCccgaGGUACCGc -3' miRNA: 3'- gAACACCaGCGUCaCCGCG----UCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 58309 | 0.7 | 0.590356 |
Target: 5'- ---uUGGcgCGCGGUGGCucCGGCACCGg -3' miRNA: 3'- gaacACCa-GCGUCACCGc-GUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 57676 | 0.67 | 0.7532 |
Target: 5'- --gGUGGgCaCGGUGGUGCugGGCGCCGc -3' miRNA: 3'- gaaCACCaGcGUCACCGCG--UCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 54515 | 0.7 | 0.559704 |
Target: 5'- --gGUGGgggGCGGUGGgGCGGgGCCGu -3' miRNA: 3'- gaaCACCag-CGUCACCgCGUCgUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 54106 | 0.68 | 0.723639 |
Target: 5'- ----aGGcgcucgccgCGCGGgaGGCGCAGCACCGg -3' miRNA: 3'- gaacaCCa--------GCGUCa-CCGCGUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 53714 | 0.69 | 0.631623 |
Target: 5'- -cUGUGGgccgGCGGcUGGCGCuguGCGCCu -3' miRNA: 3'- gaACACCag--CGUC-ACCGCGu--CGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 49950 | 0.67 | 0.7532 |
Target: 5'- --cGUGGcgCGCGGUGcCGC-GCACCu -3' miRNA: 3'- gaaCACCa-GCGUCACcGCGuCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 49913 | 0.71 | 0.509718 |
Target: 5'- ----cGGcCGCGGUGGCGCuGCGCg- -3' miRNA: 3'- gaacaCCaGCGUCACCGCGuCGUGgu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 49366 | 0.68 | 0.693356 |
Target: 5'- -----cGUCGCGGUGGuCGCcGGCACUAa -3' miRNA: 3'- gaacacCAGCGUCACC-GCG-UCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 48629 | 0.66 | 0.791046 |
Target: 5'- -aUGUGaacGcCGCGGcGGCGgGGCGCCGc -3' miRNA: 3'- gaACAC---CaGCGUCaCCGCgUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 47052 | 0.67 | 0.762848 |
Target: 5'- --gGUGcguGUCGCGGccGGCGCGGUcgauGCCAg -3' miRNA: 3'- gaaCAC---CAGCGUCa-CCGCGUCG----UGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 43240 | 0.75 | 0.311647 |
Target: 5'- --gGUGGgggcgCGCGGgcGGCGCGGCGCCc -3' miRNA: 3'- gaaCACCa----GCGUCa-CCGCGUCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 42337 | 0.73 | 0.398745 |
Target: 5'- -cUGUGGgCGCccguGUGGCGCGGCGgCGa -3' miRNA: 3'- gaACACCaGCGu---CACCGCGUCGUgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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