Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6412 | 3' | -57.3 | NC_001847.1 | + | 12940 | 0.66 | 0.800165 |
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Target: 5'- -gUGUcGUCGUgcGGUGGgGCGGCggGCCGg -3' miRNA: 3'- gaACAcCAGCG--UCACCgCGUCG--UGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 12399 | 0.72 | 0.480633 |
|
Target: 5'- -gUGUGGUCGguGaccGCGC-GCACCAa -3' miRNA: 3'- gaACACCAGCguCac-CGCGuCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 11906 | 0.69 | 0.64196 |
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Target: 5'- ----gGGUcCGCGcUGGCGCGGCAUCGu -3' miRNA: 3'- gaacaCCA-GCGUcACCGCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 10856 | 0.68 | 0.693356 |
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Target: 5'- --cGUGGccgaggCGCGGcgGGCGCgGGCGCCc -3' miRNA: 3'- gaaCACCa-----GCGUCa-CCGCG-UCGUGGu -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 10693 | 0.68 | 0.723639 |
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Target: 5'- ----cGGUCGCGcccgGGCGCGGC-CCGc -3' miRNA: 3'- gaacaCCAGCGUca--CCGCGUCGuGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 5811 | 0.67 | 0.7532 |
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Target: 5'- gCUUGcgcuUGGcgCGCcgGGUGcGUGCAGCACCc -3' miRNA: 3'- -GAAC----ACCa-GCG--UCAC-CGCGUCGUGGu -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 5058 | 0.69 | 0.631623 |
|
Target: 5'- ----cGcGUCGCGGUcgGGCGCGGC-CCAg -3' miRNA: 3'- gaacaC-CAGCGUCA--CCGCGUCGuGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 4582 | 0.69 | 0.64196 |
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Target: 5'- -gUGcgGGUCGCGGU-GCGCGGCgacgaaggcgGCCAc -3' miRNA: 3'- gaACa-CCAGCGUCAcCGCGUCG----------UGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 3399 | 0.66 | 0.826558 |
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Target: 5'- gCUUcUGGUCGCAGUcGuaGCGGCggcucaugGCCAc -3' miRNA: 3'- -GAAcACCAGCGUCA-CcgCGUCG--------UGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 2756 | 0.67 | 0.743442 |
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Target: 5'- ----cGG-CGCGGcGGCGCcGGCGCCGg -3' miRNA: 3'- gaacaCCaGCGUCaCCGCG-UCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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