Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6412 | 3' | -57.3 | NC_001847.1 | + | 82336 | 0.75 | 0.304487 |
Target: 5'- ----aGGUC-CAGUGuGCGCGGCGCCAg -3' miRNA: 3'- gaacaCCAGcGUCAC-CGCGUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 135131 | 0.69 | 0.610957 |
Target: 5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3' miRNA: 3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 5058 | 0.69 | 0.631623 |
Target: 5'- ----cGcGUCGCGGUcgGGCGCGGC-CCAg -3' miRNA: 3'- gaacaC-CAGCGUCA--CCGCGUCGuGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 106212 | 0.66 | 0.826558 |
Target: 5'- gCUUcUGGUCGCAGUcGuaGCGGCggcucaugGCCAc -3' miRNA: 3'- -GAAcACCAGCGUCA-CcgCGUCG--------UGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 87870 | 0.72 | 0.471118 |
Target: 5'- -cUGUGGUCGCuGUGGCcgcGCGGCuuuCUg -3' miRNA: 3'- gaACACCAGCGuCACCG---CGUCGu--GGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 32273 | 0.72 | 0.480633 |
Target: 5'- --cGUGGcUCGCGccguccgcGUGGCGCGGCcCCGc -3' miRNA: 3'- gaaCACC-AGCGU--------CACCGCGUCGuGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 35732 | 0.72 | 0.490241 |
Target: 5'- --cGUGGcCGCGGUGGaGUGGCugCAg -3' miRNA: 3'- gaaCACCaGCGUCACCgCGUCGugGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 84730 | 0.71 | 0.499938 |
Target: 5'- --gGUGGU-GCAGgcaGGCGC-GCACCAa -3' miRNA: 3'- gaaCACCAgCGUCa--CCGCGuCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 130783 | 0.71 | 0.549581 |
Target: 5'- ----cGGUCGCGGUGGagGCGGCcgcgGCCGg -3' miRNA: 3'- gaacaCCAGCGUCACCg-CGUCG----UGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 30048 | 0.69 | 0.60683 |
Target: 5'- --cGUGGgcgacguugccggCGCGGUGGCGCGGCu--- -3' miRNA: 3'- gaaCACCa------------GCGUCACCGCGUCGuggu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 19811 | 0.7 | 0.559704 |
Target: 5'- ----cGGUgGCGGUGGCGgGGCGgCAg -3' miRNA: 3'- gaacaCCAgCGUCACCGCgUCGUgGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 133803 | 0.71 | 0.539515 |
Target: 5'- ---aUGGccgCGCAG-GGCGCGGCGCUg -3' miRNA: 3'- gaacACCa--GCGUCaCCGCGUCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 43240 | 0.75 | 0.311647 |
Target: 5'- --gGUGGgggcgCGCGGgcGGCGCGGCGCCc -3' miRNA: 3'- gaaCACCa----GCGUCa-CCGCGUCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 42246 | 0.7 | 0.569879 |
Target: 5'- cCUUG-GcGUCGguGgugGGCaGCAGCACCu -3' miRNA: 3'- -GAACaC-CAGCguCa--CCG-CGUCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 89211 | 0.74 | 0.349358 |
Target: 5'- gCUUGUGuuugCGCAGUGGCacGCGGCGCUc -3' miRNA: 3'- -GAACACca--GCGUCACCG--CGUCGUGGu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 49913 | 0.71 | 0.509718 |
Target: 5'- ----cGGcCGCGGUGGCGCuGCGCg- -3' miRNA: 3'- gaacaCCaGCGUCACCGCGuCGUGgu -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 58309 | 0.7 | 0.590356 |
Target: 5'- ---uUGGcgCGCGGUGGCucCGGCACCGg -3' miRNA: 3'- gaacACCa-GCGUCACCGc-GUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 15936 | 0.69 | 0.621286 |
Target: 5'- -------cCGCGGUGGcCGCGGCGCCGa -3' miRNA: 3'- gaacaccaGCGUCACC-GCGUCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 58509 | 0.73 | 0.425059 |
Target: 5'- aUUGUGG-CGCGG-GGCGCccgaGGUACCGc -3' miRNA: 3'- gAACACCaGCGUCaCCGCG----UCGUGGU- -5' |
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6412 | 3' | -57.3 | NC_001847.1 | + | 28826 | 0.72 | 0.490241 |
Target: 5'- ----aGG-CGCGGUGGUGCGGCugCu -3' miRNA: 3'- gaacaCCaGCGUCACCGCGUCGugGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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