miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 4582 0.69 0.64196
Target:  5'- -gUGcgGGUCGCGGU-GCGCGGCgacgaaggcgGCCAc -3'
miRNA:   3'- gaACa-CCAGCGUCAcCGCGUCG----------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 5058 0.69 0.631623
Target:  5'- ----cGcGUCGCGGUcgGGCGCGGC-CCAg -3'
miRNA:   3'- gaacaC-CAGCGUCA--CCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 133803 0.71 0.539515
Target:  5'- ---aUGGccgCGCAG-GGCGCGGCGCUg -3'
miRNA:   3'- gaacACCa--GCGUCaCCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 58509 0.73 0.425059
Target:  5'- aUUGUGG-CGCGG-GGCGCccgaGGUACCGc -3'
miRNA:   3'- gAACACCaGCGUCaCCGCG----UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 5811 0.67 0.7532
Target:  5'- gCUUGcgcuUGGcgCGCcgGGUGcGUGCAGCACCc -3'
miRNA:   3'- -GAAC----ACCa-GCG--UCAC-CGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 99163 0.68 0.723639
Target:  5'- cCUUGUGG-CGcCAGccGGCgggagccacaGCAGCGCCGc -3'
miRNA:   3'- -GAACACCaGC-GUCa-CCG----------CGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 135131 0.69 0.610957
Target:  5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3'
miRNA:   3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5'
6412 3' -57.3 NC_001847.1 + 89211 0.74 0.349358
Target:  5'- gCUUGUGuuugCGCAGUGGCacGCGGCGCUc -3'
miRNA:   3'- -GAACACca--GCGUCACCG--CGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 54106 0.68 0.723639
Target:  5'- ----aGGcgcucgccgCGCGGgaGGCGCAGCACCGg -3'
miRNA:   3'- gaacaCCa--------GCGUCa-CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 43240 0.75 0.311647
Target:  5'- --gGUGGgggcgCGCGGgcGGCGCGGCGCCc -3'
miRNA:   3'- gaaCACCa----GCGUCa-CCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 15936 0.69 0.621286
Target:  5'- -------cCGCGGUGGcCGCGGCGCCGa -3'
miRNA:   3'- gaacaccaGCGUCACC-GCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 68124 0.69 0.666722
Target:  5'- --gGUGGUCGCGGgcgaGcGCGCgucugccccuucuccGGCGCCGc -3'
miRNA:   3'- gaaCACCAGCGUCa---C-CGCG---------------UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 42246 0.7 0.569879
Target:  5'- cCUUG-GcGUCGguGgugGGCaGCAGCACCu -3'
miRNA:   3'- -GAACaC-CAGCguCa--CCG-CGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 130783 0.71 0.549581
Target:  5'- ----cGGUCGCGGUGGagGCGGCcgcgGCCGg -3'
miRNA:   3'- gaacaCCAGCGUCACCg-CGUCG----UGGU- -5'
6412 3' -57.3 NC_001847.1 + 35732 0.72 0.490241
Target:  5'- --cGUGGcCGCGGUGGaGUGGCugCAg -3'
miRNA:   3'- gaaCACCaGCGUCACCgCGUCGugGU- -5'
6412 3' -57.3 NC_001847.1 + 87870 0.72 0.471118
Target:  5'- -cUGUGGUCGCuGUGGCcgcGCGGCuuuCUg -3'
miRNA:   3'- gaACACCAGCGuCACCG---CGUCGu--GGu -5'
6412 3' -57.3 NC_001847.1 + 48629 0.66 0.791046
Target:  5'- -aUGUGaacGcCGCGGcGGCGgGGCGCCGc -3'
miRNA:   3'- gaACAC---CaGCGUCaCCGCgUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 85509 0.67 0.766675
Target:  5'- -cUGUGGUCGgcgucUccaaaaacagcgccgGGUGGCGC-GCGCCGa -3'
miRNA:   3'- gaACACCAGC-----G---------------UCACCGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 105569 0.67 0.743442
Target:  5'- ----cGG-CGCGGcGGCGCcGGCGCCGg -3'
miRNA:   3'- gaacaCCaGCGUCaCCGCG-UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 113506 0.68 0.723639
Target:  5'- ----cGGUCGCGcccgGGCGCGGC-CCGc -3'
miRNA:   3'- gaacaCCAGCGUca--CCGCGUCGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.