miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 15936 0.69 0.621286
Target:  5'- -------cCGCGGUGGcCGCGGCGCCGa -3'
miRNA:   3'- gaacaccaGCGUCACC-GCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 5058 0.69 0.631623
Target:  5'- ----cGcGUCGCGGUcgGGCGCGGC-CCAg -3'
miRNA:   3'- gaacaC-CAGCGUCA--CCGCGUCGuGGU- -5'
6412 3' -57.3 NC_001847.1 + 5811 0.67 0.7532
Target:  5'- gCUUGcgcuUGGcgCGCcgGGUGcGUGCAGCACCc -3'
miRNA:   3'- -GAAC----ACCa-GCG--UCAC-CGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 57676 0.67 0.7532
Target:  5'- --gGUGGgCaCGGUGGUGCugGGCGCCGc -3'
miRNA:   3'- gaaCACCaGcGUCACCGCG--UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 106212 0.66 0.826558
Target:  5'- gCUUcUGGUCGCAGUcGuaGCGGCggcucaugGCCAc -3'
miRNA:   3'- -GAAcACCAGCGUCA-CcgCGUCG--------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 30429 0.66 0.80913
Target:  5'- --cGUGGcgggCGCGGaGGCGCcggGGCugCAc -3'
miRNA:   3'- gaaCACCa---GCGUCaCCGCG---UCGugGU- -5'
6412 3' -57.3 NC_001847.1 + 73002 0.66 0.80913
Target:  5'- ---cUGGcCGCAGcgcgGGCGCGGaACCAg -3'
miRNA:   3'- gaacACCaGCGUCa---CCGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 122009 0.7 0.590356
Target:  5'- ----cGGcCGCGGcaggcGGCGCGGCGCCGc -3'
miRNA:   3'- gaacaCCaGCGUCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 126926 0.66 0.81793
Target:  5'- --cGUGG-CGCAGcugcuucugcUGGCaCGGCGCCu -3'
miRNA:   3'- gaaCACCaGCGUC----------ACCGcGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 95339 0.66 0.80913
Target:  5'- ----aGG-CGCAGggGGCGCAGCcaggggagcgggGCCAg -3'
miRNA:   3'- gaacaCCaGCGUCa-CCGCGUCG------------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 92279 0.67 0.781781
Target:  5'- --cGUGG-CGCGGU-GCGCGGCuaggaaguGCCGg -3'
miRNA:   3'- gaaCACCaGCGUCAcCGCGUCG--------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 88090 0.69 0.621286
Target:  5'- -cUGgagcuGUCgGCGGUGGCGCGGCugGCCGg -3'
miRNA:   3'- gaACac---CAG-CGUCACCGCGUCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 11906 0.69 0.64196
Target:  5'- ----gGGUcCGCGcUGGCGCGGCAUCGu -3'
miRNA:   3'- gaacaCCA-GCGUcACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 116576 0.69 0.64196
Target:  5'- --cGUGGgcaucugCGCucugGGCGCAGCGCUg -3'
miRNA:   3'- gaaCACCa------GCGuca-CCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 62669 0.69 0.646093
Target:  5'- ---cUGGUacgccaucaucagcaCGCcGUGGUGCAGCGCCGc -3'
miRNA:   3'- gaacACCA---------------GCGuCACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 95294 0.69 0.65229
Target:  5'- gCUUGcGGcCGCuGgcgccuccaGGCGCGGCGCCGg -3'
miRNA:   3'- -GAACaCCaGCGuCa--------CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 17464 0.68 0.683145
Target:  5'- ----cGGUCGUacAGgccggGGCGCAGUACUAg -3'
miRNA:   3'- gaacaCCAGCG--UCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 2756 0.67 0.743442
Target:  5'- ----cGG-CGCGGcGGCGCcGGCGCCGg -3'
miRNA:   3'- gaacaCCaGCGUCaCCGCG-UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 47052 0.67 0.762848
Target:  5'- --gGUGcguGUCGCGGccGGCGCGGUcgauGCCAg -3'
miRNA:   3'- gaaCAC---CAGCGUCa-CCGCGUCG----UGGU- -5'
6412 3' -57.3 NC_001847.1 + 101911 0.67 0.772378
Target:  5'- ----aGGcgcCGCGGcgcccGGCGCGGCGCCAa -3'
miRNA:   3'- gaacaCCa--GCGUCa----CCGCGUCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.