miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 3' -57.3 NC_001847.1 + 95339 0.66 0.80913
Target:  5'- ----aGG-CGCAGggGGCGCAGCcaggggagcgggGCCAg -3'
miRNA:   3'- gaacaCCaGCGUCa-CCGCGUCG------------UGGU- -5'
6412 3' -57.3 NC_001847.1 + 73002 0.66 0.80913
Target:  5'- ---cUGGcCGCAGcgcgGGCGCGGaACCAg -3'
miRNA:   3'- gaacACCaGCGUCa---CCGCGUCgUGGU- -5'
6412 3' -57.3 NC_001847.1 + 90321 0.66 0.80913
Target:  5'- --gGUGGggcCGCcgGGgccgggGGCGCAGcCGCCAa -3'
miRNA:   3'- gaaCACCa--GCG--UCa-----CCGCGUC-GUGGU- -5'
6412 3' -57.3 NC_001847.1 + 76437 0.68 0.703515
Target:  5'- --gGUGGcCGCgacGGUGGaUGcCAGCGCCAu -3'
miRNA:   3'- gaaCACCaGCG---UCACC-GC-GUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 17464 0.68 0.683145
Target:  5'- ----cGGUCGUacAGgccggGGCGCAGUACUAg -3'
miRNA:   3'- gaacaCCAGCG--UCa----CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 95294 0.69 0.65229
Target:  5'- gCUUGcGGcCGCuGgcgccuccaGGCGCGGCGCCGg -3'
miRNA:   3'- -GAACaCCaGCGuCa--------CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 64695 0.76 0.283765
Target:  5'- --cGU-GUCGCAGUgcgucaGGCGCGGCACCGc -3'
miRNA:   3'- gaaCAcCAGCGUCA------CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 118767 0.76 0.283765
Target:  5'- gUUGUGGcgCGCGGUGuGaGCGGCACCGg -3'
miRNA:   3'- gAACACCa-GCGUCAC-CgCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 116679 0.76 0.297453
Target:  5'- -gUGUGGguccggCGCuGcgGGCGCGGCACCGc -3'
miRNA:   3'- gaACACCa-----GCGuCa-CCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 78191 0.73 0.390208
Target:  5'- -aUGUGGUCGUAgGUGaacUGCAGCGCCGc -3'
miRNA:   3'- gaACACCAGCGU-CACc--GCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 42337 0.73 0.398745
Target:  5'- -cUGUGGgCGCccguGUGGCGCGGCGgCGa -3'
miRNA:   3'- gaACACCaGCGu---CACCGCGUCGUgGU- -5'
6412 3' -57.3 NC_001847.1 + 82501 0.72 0.452381
Target:  5'- --cGUaGGUCGCGucUGGCGCGGCGCUc -3'
miRNA:   3'- gaaCA-CCAGCGUc-ACCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 12399 0.72 0.480633
Target:  5'- -gUGUGGUCGguGaccGCGC-GCACCAa -3'
miRNA:   3'- gaACACCAGCguCac-CGCGuCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 81417 0.71 0.499938
Target:  5'- ---aUGGUCGCA--GGCGCacAGCGCCAg -3'
miRNA:   3'- gaacACCAGCGUcaCCGCG--UCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 30990 0.71 0.539515
Target:  5'- ---aUGGccgCGCAG-GGCGCGGCGCUg -3'
miRNA:   3'- gaacACCa--GCGUCaCCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 32318 0.69 0.610957
Target:  5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3'
miRNA:   3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5'
6412 3' -57.3 NC_001847.1 + 88090 0.69 0.621286
Target:  5'- -cUGgagcuGUCgGCGGUGGCGCGGCugGCCGg -3'
miRNA:   3'- gaACac---CAG-CGUCACCGCGUCG--UGGU- -5'
6412 3' -57.3 NC_001847.1 + 11906 0.69 0.64196
Target:  5'- ----gGGUcCGCGcUGGCGCGGCAUCGu -3'
miRNA:   3'- gaacaCCA-GCGUcACCGCGUCGUGGU- -5'
6412 3' -57.3 NC_001847.1 + 116576 0.69 0.64196
Target:  5'- --cGUGGgcaucugCGCucugGGCGCAGCGCUg -3'
miRNA:   3'- gaaCACCa------GCGuca-CCGCGUCGUGGu -5'
6412 3' -57.3 NC_001847.1 + 62669 0.69 0.646093
Target:  5'- ---cUGGUacgccaucaucagcaCGCcGUGGUGCAGCGCCGc -3'
miRNA:   3'- gaacACCA---------------GCGuCACCGCGUCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.