Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6412 | 3' | -57.3 | NC_001847.1 | + | 17464 | 0.68 | 0.683145 |
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Target: 5'- ----cGGUCGUacAGgccggGGCGCAGUACUAg -3' miRNA: 3'- gaacaCCAGCG--UCa----CCGCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 95294 | 0.69 | 0.65229 |
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Target: 5'- gCUUGcGGcCGCuGgcgccuccaGGCGCGGCGCCGg -3' miRNA: 3'- -GAACaCCaGCGuCa--------CCGCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 62669 | 0.69 | 0.646093 |
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Target: 5'- ---cUGGUacgccaucaucagcaCGCcGUGGUGCAGCGCCGc -3' miRNA: 3'- gaacACCA---------------GCGuCACCGCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 116576 | 0.69 | 0.64196 |
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Target: 5'- --cGUGGgcaucugCGCucugGGCGCAGCGCUg -3' miRNA: 3'- gaaCACCa------GCGuca-CCGCGUCGUGGu -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 11906 | 0.69 | 0.64196 |
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Target: 5'- ----gGGUcCGCGcUGGCGCGGCAUCGu -3' miRNA: 3'- gaacaCCA-GCGUcACCGCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 88090 | 0.69 | 0.621286 |
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Target: 5'- -cUGgagcuGUCgGCGGUGGCGCGGCugGCCGg -3' miRNA: 3'- gaACac---CAG-CGUCACCGCGUCG--UGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 32318 | 0.69 | 0.610957 |
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Target: 5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3' miRNA: 3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 122009 | 0.7 | 0.590356 |
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Target: 5'- ----cGGcCGCGGcaggcGGCGCGGCGCCGc -3' miRNA: 3'- gaacaCCaGCGUCa----CCGCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 106953 | 0.7 | 0.580099 |
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Target: 5'- --cGUGGcgCGCAG-GcGCGCGGcCGCCAg -3' miRNA: 3'- gaaCACCa-GCGUCaC-CGCGUC-GUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 83259 | 1.08 | 0.00179 |
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Target: 5'- gCUUGUGGUCGCAGUGGCGCAGCACCAg -3' miRNA: 3'- -GAACACCAGCGUCACCGCGUCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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