Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6412 | 3' | -57.3 | NC_001847.1 | + | 60751 | 0.69 | 0.631623 |
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Target: 5'- ----cGG-CGCGGUGGCGguuuuccagcucCAGCGCCAc -3' miRNA: 3'- gaacaCCaGCGUCACCGC------------GUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 53714 | 0.69 | 0.631623 |
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Target: 5'- -cUGUGGgccgGCGGcUGGCGCuguGCGCCu -3' miRNA: 3'- gaACACCag--CGUC-ACCGCGu--CGUGGu -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 5058 | 0.69 | 0.631623 |
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Target: 5'- ----cGcGUCGCGGUcgGGCGCGGC-CCAg -3' miRNA: 3'- gaacaC-CAGCGUCA--CCGCGUCGuGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 15936 | 0.69 | 0.621286 |
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Target: 5'- -------cCGCGGUGGcCGCGGCGCCGa -3' miRNA: 3'- gaacaccaGCGUCACC-GCGUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 135131 | 0.69 | 0.610957 |
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Target: 5'- ----gGGUCGCAGggggcccgcgcGGCGCGGCGCgGa -3' miRNA: 3'- gaacaCCAGCGUCa----------CCGCGUCGUGgU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 30048 | 0.69 | 0.60683 |
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Target: 5'- --cGUGGgcgacguugccggCGCGGUGGCGCGGCu--- -3' miRNA: 3'- gaaCACCa------------GCGUCACCGCGUCGuggu -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 58309 | 0.7 | 0.590356 |
|
Target: 5'- ---uUGGcgCGCGGUGGCucCGGCACCGg -3' miRNA: 3'- gaacACCa-GCGUCACCGc-GUCGUGGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 42246 | 0.7 | 0.569879 |
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Target: 5'- cCUUG-GcGUCGguGgugGGCaGCAGCACCu -3' miRNA: 3'- -GAACaC-CAGCguCa--CCG-CGUCGUGGu -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 19811 | 0.7 | 0.559704 |
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Target: 5'- ----cGGUgGCGGUGGCGgGGCGgCAg -3' miRNA: 3'- gaacaCCAgCGUCACCGCgUCGUgGU- -5' |
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| 6412 | 3' | -57.3 | NC_001847.1 | + | 82336 | 0.75 | 0.304487 |
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Target: 5'- ----aGGUC-CAGUGuGCGCGGCGCCAg -3' miRNA: 3'- gaacaCCAGcGUCAC-CGCGUCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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