miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6412 5' -54.2 NC_001847.1 + 99765 0.66 0.941426
Target:  5'- cGUGGucaaagcgcuccAGCUGCGCCAGCgcgcUCGGaUCAg- -3'
miRNA:   3'- aCAUU------------UUGACGCGGUCG----AGCC-GGUgc -5'
6412 5' -54.2 NC_001847.1 + 35983 0.66 0.941426
Target:  5'- --cAAGGC-GCGCgCAGCcgcgcugcaggCGGCCGCGg -3'
miRNA:   3'- acaUUUUGaCGCG-GUCGa----------GCCGGUGC- -5'
6412 5' -54.2 NC_001847.1 + 14031 0.66 0.941426
Target:  5'- -aUAGAg--GCGCUGG-UCGGCCGCGa -3'
miRNA:   3'- acAUUUugaCGCGGUCgAGCCGGUGC- -5'
6412 5' -54.2 NC_001847.1 + 89912 0.66 0.941426
Target:  5'- --cGAggUUGUGCCGcGCgaGGCCGCGc -3'
miRNA:   3'- acaUUuuGACGCGGU-CGagCCGGUGC- -5'
6412 5' -54.2 NC_001847.1 + 79294 0.66 0.941426
Target:  5'- gGUGA-ACgGCGCCGGCUgGcaGCUGCGc -3'
miRNA:   3'- aCAUUuUGaCGCGGUCGAgC--CGGUGC- -5'
6412 5' -54.2 NC_001847.1 + 75776 0.66 0.941426
Target:  5'- gGUGAAcACgGcCGCgGGCUCGG-CGCGg -3'
miRNA:   3'- aCAUUU-UGaC-GCGgUCGAGCCgGUGC- -5'
6412 5' -54.2 NC_001847.1 + 15537 0.66 0.941426
Target:  5'- cGggcuGCUgGCGCCGGUgcgcgcgCGGCCGuCGg -3'
miRNA:   3'- aCauuuUGA-CGCGGUCGa------GCCGGU-GC- -5'
6412 5' -54.2 NC_001847.1 + 97438 0.66 0.941426
Target:  5'- uUGUu--GCUGCG-CAGCcgCGcGCCGCa -3'
miRNA:   3'- -ACAuuuUGACGCgGUCGa-GC-CGGUGc -5'
6412 5' -54.2 NC_001847.1 + 105908 0.66 0.941426
Target:  5'- ---cAGGCcGCgGCCGGCa-GGCCGCGg -3'
miRNA:   3'- acauUUUGaCG-CGGUCGagCCGGUGC- -5'
6412 5' -54.2 NC_001847.1 + 3095 0.66 0.941426
Target:  5'- ---cAGGCcGCgGCCGGCa-GGCCGCGg -3'
miRNA:   3'- acauUUUGaCG-CGGUCGagCCGGUGC- -5'
6412 5' -54.2 NC_001847.1 + 102583 0.66 0.941426
Target:  5'- cGgcGGGCgGCGCCAuccuGCUgGGCgACa -3'
miRNA:   3'- aCauUUUGaCGCGGU----CGAgCCGgUGc -5'
6412 5' -54.2 NC_001847.1 + 35931 0.66 0.941426
Target:  5'- uUGUGGcGGC-GCGCCGccGCgCGGCCGCc -3'
miRNA:   3'- -ACAUU-UUGaCGCGGU--CGaGCCGGUGc -5'
6412 5' -54.2 NC_001847.1 + 100737 0.66 0.941426
Target:  5'- ------uCUGCGCCgAGCUCucggGGCCGgGg -3'
miRNA:   3'- acauuuuGACGCGG-UCGAG----CCGGUgC- -5'
6412 5' -54.2 NC_001847.1 + 55062 0.66 0.940949
Target:  5'- --aGGAGCUG-GCCGcguuuauGCUggCGGCCGCGg -3'
miRNA:   3'- acaUUUUGACgCGGU-------CGA--GCCGGUGC- -5'
6412 5' -54.2 NC_001847.1 + 3327 0.66 0.936549
Target:  5'- -----cGCUGcCGCCGGCgcCGGCCucCGg -3'
miRNA:   3'- acauuuUGAC-GCGGUCGa-GCCGGu-GC- -5'
6412 5' -54.2 NC_001847.1 + 36983 0.66 0.936549
Target:  5'- cGgcGAGCgggcccGCGCCgAGCggCGGCgGCGc -3'
miRNA:   3'- aCauUUUGa-----CGCGG-UCGa-GCCGgUGC- -5'
6412 5' -54.2 NC_001847.1 + 85091 0.66 0.936549
Target:  5'- --------aGCGCCAGCa-GGCCGCc -3'
miRNA:   3'- acauuuugaCGCGGUCGagCCGGUGc -5'
6412 5' -54.2 NC_001847.1 + 44931 0.66 0.936549
Target:  5'- cGUGucGCUgggGCGCUcgGGCUgGGCgACGg -3'
miRNA:   3'- aCAUuuUGA---CGCGG--UCGAgCCGgUGC- -5'
6412 5' -54.2 NC_001847.1 + 46178 0.66 0.936549
Target:  5'- cGUAAAccacgcgcacGCgguaGCgGCCGGCggCGGCCGCc -3'
miRNA:   3'- aCAUUU----------UGa---CG-CGGUCGa-GCCGGUGc -5'
6412 5' -54.2 NC_001847.1 + 106140 0.66 0.936549
Target:  5'- -----cGCUGcCGCCGGCgcCGGCCucCGg -3'
miRNA:   3'- acauuuUGAC-GCGGUCGa-GCCGGu-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.